miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 3' -55.9 NC_003521.1 + 231795 0.66 0.969574
Target:  5'- --cGCUCAUUCUCaCGGAgu-CCGUGGc -3'
miRNA:   3'- cauCGAGUAGGAG-GUCUagcGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 97934 0.66 0.969574
Target:  5'- aUGGCgCcgCuCUCCaagGGAUCGCCGCu- -3'
miRNA:   3'- cAUCGaGuaG-GAGG---UCUAGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 100134 0.66 0.969574
Target:  5'- cUGGCg-GUCCUgCgGGAagGCCGUGGg -3'
miRNA:   3'- cAUCGagUAGGA-GgUCUagCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 154602 0.66 0.969574
Target:  5'- -gAGCUCAaggCCgCCGGcgUGCCGCc- -3'
miRNA:   3'- caUCGAGUa--GGaGGUCuaGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 23600 0.66 0.969574
Target:  5'- cUGGCcugCAUCCUCUucgcGAUCugcaccGCCGUGGc -3'
miRNA:   3'- cAUCGa--GUAGGAGGu---CUAG------CGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 141181 0.66 0.966613
Target:  5'- cGUGuGCUCcUUUUCgCGGGUgGCCGUGGc -3'
miRNA:   3'- -CAU-CGAGuAGGAG-GUCUAgCGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 129265 0.66 0.966613
Target:  5'- -cGGCUCAgccgcaCCUCgAGGUagaggCGCCgGCGGu -3'
miRNA:   3'- caUCGAGUa-----GGAGgUCUA-----GCGG-CGCC- -5'
14284 3' -55.9 NC_003521.1 + 76807 0.66 0.966613
Target:  5'- -cAGCUCcUCCUCCAGGgacCGgCuCGGc -3'
miRNA:   3'- caUCGAGuAGGAGGUCUa--GCgGcGCC- -5'
14284 3' -55.9 NC_003521.1 + 29222 0.66 0.966613
Target:  5'- -gAGCUCAuggagaUCCUCUacuGGGccuccaGCCGCGGc -3'
miRNA:   3'- caUCGAGU------AGGAGG---UCUag----CGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 5242 0.66 0.966613
Target:  5'- ---uCUCGUCCUCCcGcacGUC-CCGCGGg -3'
miRNA:   3'- caucGAGUAGGAGGuC---UAGcGGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 20910 0.66 0.963455
Target:  5'- -gAGCagGUCC-CCGGGgaccggucucaaUCGCaCGCGGg -3'
miRNA:   3'- caUCGagUAGGaGGUCU------------AGCG-GCGCC- -5'
14284 3' -55.9 NC_003521.1 + 123479 0.66 0.963455
Target:  5'- -cAGCUCcgUgUCC--GUCGCCgGCGGg -3'
miRNA:   3'- caUCGAGuaGgAGGucUAGCGG-CGCC- -5'
14284 3' -55.9 NC_003521.1 + 100041 0.66 0.960093
Target:  5'- -cGGCUCGUCCagCCAGucgaacUGCUgGCGGa -3'
miRNA:   3'- caUCGAGUAGGa-GGUCua----GCGG-CGCC- -5'
14284 3' -55.9 NC_003521.1 + 138368 0.66 0.960093
Target:  5'- -cAGCUCAUCCUgCug--CGCCGUa- -3'
miRNA:   3'- caUCGAGUAGGAgGucuaGCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 232962 0.66 0.960093
Target:  5'- -gAGCUCAUCC-CCAuGGagGCCGUc- -3'
miRNA:   3'- caUCGAGUAGGaGGU-CUagCGGCGcc -5'
14284 3' -55.9 NC_003521.1 + 111573 0.66 0.960093
Target:  5'- --uGCUCuUCCacaUCCAGGU-GCCGCGc -3'
miRNA:   3'- cauCGAGuAGG---AGGUCUAgCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 1766 0.66 0.960093
Target:  5'- -aGGCUC-UCUUCCucGGAacacggCGCCGCGa -3'
miRNA:   3'- caUCGAGuAGGAGG--UCUa-----GCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 201993 0.66 0.960093
Target:  5'- -aGGCUC-UCUUCCucGGAacacggCGCCGCGa -3'
miRNA:   3'- caUCGAGuAGGAGG--UCUa-----GCGGCGCc -5'
14284 3' -55.9 NC_003521.1 + 187550 0.66 0.956524
Target:  5'- -cGGCcCGUCCUCCuucAGGUCuuuuucgccaaGuCCGCGGg -3'
miRNA:   3'- caUCGaGUAGGAGG---UCUAG-----------C-GGCGCC- -5'
14284 3' -55.9 NC_003521.1 + 169966 0.66 0.952744
Target:  5'- cGUuGCUC-UCCUCCuGGGagGCgGCGGc -3'
miRNA:   3'- -CAuCGAGuAGGAGG-UCUagCGgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.