miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 5' -65 NC_003521.1 + 240560 0.66 0.681344
Target:  5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3'
miRNA:   3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5'
14284 5' -65 NC_003521.1 + 40333 0.66 0.681344
Target:  5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3'
miRNA:   3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5'
14284 5' -65 NC_003521.1 + 11 0.66 0.681344
Target:  5'- cUCCGCugcgggucccgGGgGGUGGGGGGGuGUuuuugGCgGGg -3'
miRNA:   3'- cAGGCG-----------CCgCCGCCCCCUC-CA-----UGgCC- -5'
14284 5' -65 NC_003521.1 + 186624 0.66 0.672175
Target:  5'- --aCGCGGCGGCGGu---GGUGgCGGc -3'
miRNA:   3'- cagGCGCCGCCGCCcccuCCAUgGCC- -5'
14284 5' -65 NC_003521.1 + 197275 0.66 0.672175
Target:  5'- --gCGcCGGCGGCGGggagcGGGAGGgcggcucgACgGGa -3'
miRNA:   3'- cagGC-GCCGCCGCC-----CCCUCCa-------UGgCC- -5'
14284 5' -65 NC_003521.1 + 162237 0.66 0.672175
Target:  5'- -gCCGaCGGCgcuGGCGGGgugggcgucaacGGGGGUgcgacACCGGc -3'
miRNA:   3'- caGGC-GCCG---CCGCCC------------CCUCCA-----UGGCC- -5'
14284 5' -65 NC_003521.1 + 5654 0.66 0.672175
Target:  5'- -aUgGCGGCGGagGGuGGGGGGUcgagACaCGGg -3'
miRNA:   3'- caGgCGCCGCCg-CC-CCCUCCA----UG-GCC- -5'
14284 5' -65 NC_003521.1 + 224025 0.66 0.672175
Target:  5'- -gCC-CGGCGGuCGGGGcGGGcGCCGu -3'
miRNA:   3'- caGGcGCCGCC-GCCCCcUCCaUGGCc -5'
14284 5' -65 NC_003521.1 + 100711 0.66 0.671256
Target:  5'- -gCCGCGGCcgcugauggaggaGGCGGGGGGuucaugucGUcguCCGGg -3'
miRNA:   3'- caGGCGCCG-------------CCGCCCCCUc-------CAu--GGCC- -5'
14284 5' -65 NC_003521.1 + 67263 0.66 0.662978
Target:  5'- -cCCGUGGCaggagGGCGGgcaGGGAGGacaGCCGc -3'
miRNA:   3'- caGGCGCCG-----CCGCC---CCCUCCa--UGGCc -5'
14284 5' -65 NC_003521.1 + 17772 0.66 0.662978
Target:  5'- -aCCGcCGGCGGCGGacGGucAGGUGaaGGa -3'
miRNA:   3'- caGGC-GCCGCCGCCc-CC--UCCAUggCC- -5'
14284 5' -65 NC_003521.1 + 17009 0.66 0.662978
Target:  5'- -cCCGCGGUGGCGGcGGcGcAGGc-CCGu -3'
miRNA:   3'- caGGCGCCGCCGCC-CC-C-UCCauGGCc -5'
14284 5' -65 NC_003521.1 + 168996 0.66 0.653761
Target:  5'- -gUCGCGGgaGGCGGGcGAcGGgGCCGGc -3'
miRNA:   3'- caGGCGCCg-CCGCCCcCU-CCaUGGCC- -5'
14284 5' -65 NC_003521.1 + 74905 0.66 0.653761
Target:  5'- -aCgGUGGCGGCGGuGGAGucGgcCCGGc -3'
miRNA:   3'- caGgCGCCGCCGCCcCCUC--CauGGCC- -5'
14284 5' -65 NC_003521.1 + 101187 0.66 0.653761
Target:  5'- cGUCCGCGccCGGCGGGcGGAucuugACCGa -3'
miRNA:   3'- -CAGGCGCc-GCCGCCC-CCUcca--UGGCc -5'
14284 5' -65 NC_003521.1 + 31631 0.66 0.652839
Target:  5'- -aCCGCGGCcgacGGUGGGgucaucuGGAGGcuccCCGGc -3'
miRNA:   3'- caGGCGCCG----CCGCCC-------CCUCCau--GGCC- -5'
14284 5' -65 NC_003521.1 + 118011 0.66 0.644531
Target:  5'- ---aGCGGCGGCGuGucgcugccgcGGGAcucGGUGCUGGg -3'
miRNA:   3'- caggCGCCGCCGC-C----------CCCU---CCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 170347 0.66 0.644531
Target:  5'- --aCGUGGCGGCaGcGGuGGUACuCGGg -3'
miRNA:   3'- cagGCGCCGCCGcCcCCuCCAUG-GCC- -5'
14284 5' -65 NC_003521.1 + 187898 0.66 0.644531
Target:  5'- --aCG-GGCGGCGGGGGcAGGUcgAUCa- -3'
miRNA:   3'- cagGCgCCGCCGCCCCC-UCCA--UGGcc -5'
14284 5' -65 NC_003521.1 + 217846 0.66 0.644531
Target:  5'- cGUCUcuCGGgGGgGGGGGGGGguuguUCGGu -3'
miRNA:   3'- -CAGGc-GCCgCCgCCCCCUCCau---GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.