miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 240747 0.68 0.764444
Target:  5'- cGACcGGCCGGccCGCCGCacGCcGCCg -3'
miRNA:   3'- -CUGcCUGGCCaaGCGGCGaaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 240714 0.72 0.53812
Target:  5'- cACGGcuCCGGc-CGCCGCUU-CGGCCu -3'
miRNA:   3'- cUGCCu-GGCCaaGCGGCGAAcGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 240605 0.74 0.448377
Target:  5'- cACGGaACCGGUUucCGCgGCggcgUGCGGCg -3'
miRNA:   3'- cUGCC-UGGCCAA--GCGgCGa---ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 239882 0.69 0.718831
Target:  5'- aGCGGACCacGUUCcaGUCGCa-GCGGCCu -3'
miRNA:   3'- cUGCCUGGc-CAAG--CGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 239688 0.68 0.767994
Target:  5'- gGACGGcAgCGGUucgugucccgUCGCCGCcucguggacgaugGUGGCCa -3'
miRNA:   3'- -CUGCC-UgGCCA----------AGCGGCGaa-----------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 234193 0.67 0.79063
Target:  5'- aGCGGGCCaagcGUUCG-CGC--GCGGCCu -3'
miRNA:   3'- cUGCCUGGc---CAAGCgGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 233161 0.66 0.854419
Target:  5'- --gGGcACCGcuGUccgCGCCGCcgugGCGGCCg -3'
miRNA:   3'- cugCC-UGGC--CAa--GCGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 229243 0.69 0.718831
Target:  5'- cGCGGGCCGcGga-GgUGCUUGCGGUg -3'
miRNA:   3'- cUGCCUGGC-CaagCgGCGAACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 228054 0.71 0.594853
Target:  5'- aGCGGAgCGGUUCGgUGCgucUG-GGCCa -3'
miRNA:   3'- cUGCCUgGCCAAGCgGCGa--ACgCCGG- -5'
14290 3' -59.9 NC_003521.1 + 223810 0.68 0.776792
Target:  5'- cGACGGgccugcgccgccgccACCGcGggCGCCuGCUgucccUGCGGCUg -3'
miRNA:   3'- -CUGCC---------------UGGC-CaaGCGG-CGA-----ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 223732 0.74 0.412391
Target:  5'- cGGCGGGuCCGGUggcgggaacgugggUCGCCGCcaGCGGUa -3'
miRNA:   3'- -CUGCCU-GGCCA--------------AGCGGCGaaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 223401 0.67 0.79063
Target:  5'- cGCGGGCCGuGUggCGCCcCggcGCGGCg -3'
miRNA:   3'- cUGCCUGGC-CAa-GCGGcGaa-CGCCGg -5'
14290 3' -59.9 NC_003521.1 + 223320 0.74 0.423083
Target:  5'- -cCGGGCCGGgaacCGCCGUgaccgGCGGCg -3'
miRNA:   3'- cuGCCUGGCCaa--GCGGCGaa---CGCCGg -5'
14290 3' -59.9 NC_003521.1 + 220657 0.68 0.782017
Target:  5'- cGCGGACCGucgUCGCCGUcgucuCGGCa -3'
miRNA:   3'- cUGCCUGGCca-AGCGGCGaac--GCCGg -5'
14290 3' -59.9 NC_003521.1 + 218400 0.66 0.861657
Target:  5'- gGGCGGuACuCGGccaCGCCGCgcaGCauGGCCa -3'
miRNA:   3'- -CUGCC-UG-GCCaa-GCGGCGaa-CG--CCGG- -5'
14290 3' -59.9 NC_003521.1 + 217345 0.66 0.861657
Target:  5'- gGACGGcgGCCGGUccucguacUUGCUGUguaacaCGGCCa -3'
miRNA:   3'- -CUGCC--UGGCCA--------AGCGGCGaac---GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 214830 0.66 0.868712
Target:  5'- cGACGG--CGGUUCcauGCUGUUUGCuGCCc -3'
miRNA:   3'- -CUGCCugGCCAAG---CGGCGAACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 213734 0.68 0.737326
Target:  5'- aGACGGcGCCGcagaagGCCGUggugGCGGCCa -3'
miRNA:   3'- -CUGCC-UGGCcaag--CGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 213115 0.67 0.799117
Target:  5'- cGACGcGCUGGgugUGgCGUggUGCGGCCg -3'
miRNA:   3'- -CUGCcUGGCCaa-GCgGCGa-ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 211055 0.71 0.614015
Target:  5'- uGGCuGACCucGUUCGUCGCUcGCGGCg -3'
miRNA:   3'- -CUGcCUGGc-CAAGCGGCGAaCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.