miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 80543 0.66 0.883184
Target:  5'- --uGCCGGCGG--AGCCcaGGCCGcucaUGAg -3'
miRNA:   3'- guuCGGCCGCCauUCGG--UCGGCc---ACU- -5'
14299 3' -59 NC_003521.1 + 229121 0.66 0.883184
Target:  5'- gAGGCCGGacgaGGaaUGAGCCGG-UGGUGc -3'
miRNA:   3'- gUUCGGCCg---CC--AUUCGGUCgGCCACu -5'
14299 3' -59 NC_003521.1 + 85407 0.66 0.883184
Target:  5'- -uGGCCGGCaGcAGGCCu-CCGGUGc -3'
miRNA:   3'- guUCGGCCGcCaUUCGGucGGCCACu -5'
14299 3' -59 NC_003521.1 + 124196 0.66 0.883184
Target:  5'- -cGGCUGGgGGUGAGCgGGCCc---- -3'
miRNA:   3'- guUCGGCCgCCAUUCGgUCGGccacu -5'
14299 3' -59 NC_003521.1 + 43639 0.66 0.883184
Target:  5'- gGAGgCGGCGGcc-GCC-GCCGGaGAg -3'
miRNA:   3'- gUUCgGCCGCCauuCGGuCGGCCaCU- -5'
14299 3' -59 NC_003521.1 + 55771 0.66 0.881171
Target:  5'- -cGGCCGGCGGUAcAGCuCGaagaugaacuugccGCCGGc-- -3'
miRNA:   3'- guUCGGCCGCCAU-UCG-GU--------------CGGCCacu -5'
14299 3' -59 NC_003521.1 + 20733 0.66 0.876403
Target:  5'- --cGCUGGCGGUGcaUCAGCUGcGUGu -3'
miRNA:   3'- guuCGGCCGCCAUucGGUCGGC-CACu -5'
14299 3' -59 NC_003521.1 + 92248 0.66 0.876403
Target:  5'- --cGCCGcGCGGUcuuuuGGCCGGUCGcGUcGAc -3'
miRNA:   3'- guuCGGC-CGCCAu----UCGGUCGGC-CA-CU- -5'
14299 3' -59 NC_003521.1 + 69739 0.66 0.876403
Target:  5'- -cGGCgGGCGGgGAGgCGG-CGGUGGc -3'
miRNA:   3'- guUCGgCCGCCaUUCgGUCgGCCACU- -5'
14299 3' -59 NC_003521.1 + 101130 0.66 0.876403
Target:  5'- gCGGGUCGGCGGgcacgcggaAAGCgCGGCgCGGUc- -3'
miRNA:   3'- -GUUCGGCCGCCa--------UUCG-GUCG-GCCAcu -5'
14299 3' -59 NC_003521.1 + 17774 0.66 0.876403
Target:  5'- --cGCCGGCGGc-GGaCGGUCaGGUGAa -3'
miRNA:   3'- guuCGGCCGCCauUCgGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 99351 0.66 0.876403
Target:  5'- gAGGaaGGCGGUGAGgCugcuguuguuGCUGGUGGu -3'
miRNA:   3'- gUUCggCCGCCAUUCgGu---------CGGCCACU- -5'
14299 3' -59 NC_003521.1 + 174266 0.66 0.876403
Target:  5'- --cGCUGGCGc---GCCAgGUCGGUGAa -3'
miRNA:   3'- guuCGGCCGCcauuCGGU-CGGCCACU- -5'
14299 3' -59 NC_003521.1 + 152900 0.66 0.869423
Target:  5'- gCAuGcCCGGCGcGgcGGCCAGCCaGGa-- -3'
miRNA:   3'- -GUuC-GGCCGC-CauUCGGUCGG-CCacu -5'
14299 3' -59 NC_003521.1 + 123598 0.66 0.869423
Target:  5'- gGAGCCGccGCGGcc-GUCAGCgGGUGc -3'
miRNA:   3'- gUUCGGC--CGCCauuCGGUCGgCCACu -5'
14299 3' -59 NC_003521.1 + 26105 0.66 0.869423
Target:  5'- gGAGUCGGCcaGGUAgaguucGGCgGGCCGGcUGc -3'
miRNA:   3'- gUUCGGCCG--CCAU------UCGgUCGGCC-ACu -5'
14299 3' -59 NC_003521.1 + 196956 0.66 0.869423
Target:  5'- uGGGCgaCGGCccGG-GAGCCGGCCGGg-- -3'
miRNA:   3'- gUUCG--GCCG--CCaUUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 89735 0.66 0.869423
Target:  5'- uGGGCacgggGGCGGUGAcGgCAGCCGGc-- -3'
miRNA:   3'- gUUCGg----CCGCCAUU-CgGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 53180 0.66 0.869423
Target:  5'- gAGGUCGGCGac--GCC-GUCGGUGAa -3'
miRNA:   3'- gUUCGGCCGCcauuCGGuCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 17228 0.66 0.869423
Target:  5'- --cGUCGcGCGGUauggcaagcGAGCCGGCgucuuCGGUGGa -3'
miRNA:   3'- guuCGGC-CGCCA---------UUCGGUCG-----GCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.