miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 208605 0.68 0.763087
Target:  5'- uGAGUuugCGGCGGccauAGCCAGUcaccgCGGUGAg -3'
miRNA:   3'- gUUCG---GCCGCCau--UCGGUCG-----GCCACU- -5'
14299 3' -59 NC_003521.1 + 207354 0.66 0.854881
Target:  5'- uCGGGUCGGCGc--GGCCGGCCGa--- -3'
miRNA:   3'- -GUUCGGCCGCcauUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 207040 0.69 0.716498
Target:  5'- -cAGUCGGUGGcUGGGCCgcaGGCCGGa-- -3'
miRNA:   3'- guUCGGCCGCC-AUUCGG---UCGGCCacu -5'
14299 3' -59 NC_003521.1 + 203024 0.7 0.668254
Target:  5'- aCGGGuUCGGCGGUGA--UAGCCGGUGc -3'
miRNA:   3'- -GUUC-GGCCGCCAUUcgGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 201205 0.76 0.33041
Target:  5'- gAGGCCGGCGGUcugcucccgcuGGGCCGGCCGu--- -3'
miRNA:   3'- gUUCGGCCGCCA-----------UUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 200313 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 198264 0.71 0.619333
Target:  5'- -cGGCCGcCGGacAGCCAGCCGGg-- -3'
miRNA:   3'- guUCGGCcGCCauUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 196956 0.66 0.869423
Target:  5'- uGGGCgaCGGCccGG-GAGCCGGCCGGg-- -3'
miRNA:   3'- gUUCG--GCCG--CCaUUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 196051 0.72 0.532332
Target:  5'- aGAGCaccgGGCGGaAGGCCGGCgaGGUGGa -3'
miRNA:   3'- gUUCGg---CCGCCaUUCGGUCGg-CCACU- -5'
14299 3' -59 NC_003521.1 + 195343 0.68 0.789829
Target:  5'- aAGGCUgccguGGUGGUGGGCCGGgugaaGGUGAc -3'
miRNA:   3'- gUUCGG-----CCGCCAUUCGGUCgg---CCACU- -5'
14299 3' -59 NC_003521.1 + 195193 0.69 0.697343
Target:  5'- gGAGCCGGCGGcgguGGCCGucugcGUCGGcgcUGAu -3'
miRNA:   3'- gUUCGGCCGCCau--UCGGU-----CGGCC---ACU- -5'
14299 3' -59 NC_003521.1 + 193301 0.67 0.823628
Target:  5'- gGAGUCGGCGcGgggguGGUgGGCaCGGUGGg -3'
miRNA:   3'- gUUCGGCCGC-Cau---UCGgUCG-GCCACU- -5'
14299 3' -59 NC_003521.1 + 193178 0.67 0.8396
Target:  5'- gGAGCCGGCGG-GAGC-GGCgGagcGUGAa -3'
miRNA:   3'- gUUCGGCCGCCaUUCGgUCGgC---CACU- -5'
14299 3' -59 NC_003521.1 + 187604 0.71 0.629127
Target:  5'- --uGCCGGUGGgcacGGCCuGCCGGg-- -3'
miRNA:   3'- guuCGGCCGCCau--UCGGuCGGCCacu -5'
14299 3' -59 NC_003521.1 + 186503 0.68 0.769421
Target:  5'- aGAGCCccgucgggaucucgGGCGGUGucGCCAGCgGGg-- -3'
miRNA:   3'- gUUCGG--------------CCGCCAUu-CGGUCGgCCacu -5'
14299 3' -59 NC_003521.1 + 185624 0.77 0.302715
Target:  5'- gGAGCCGGCGGacuGCCAucGCCGGUc- -3'
miRNA:   3'- gUUCGGCCGCCauuCGGU--CGGCCAcu -5'
14299 3' -59 NC_003521.1 + 184947 0.66 0.854881
Target:  5'- uCGAGCacauguacuucgCGGCGGUGcgGGCCAGCgUGGa-- -3'
miRNA:   3'- -GUUCG------------GCCGCCAU--UCGGUCG-GCCacu -5'
14299 3' -59 NC_003521.1 + 180809 0.68 0.789829
Target:  5'- gAGGCCGGUGcuGUcgcgcugcugcAGGCU-GCCGGUGAa -3'
miRNA:   3'- gUUCGGCCGC--CA-----------UUCGGuCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 179053 0.72 0.570624
Target:  5'- gGAGCCGGCGGc-GGUC--CCGGUGAc -3'
miRNA:   3'- gUUCGGCCGCCauUCGGucGGCCACU- -5'
14299 3' -59 NC_003521.1 + 174266 0.66 0.876403
Target:  5'- --cGCUGGCGc---GCCAgGUCGGUGAa -3'
miRNA:   3'- guuCGGCCGCcauuCGGU-CGGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.