miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 203024 0.7 0.668254
Target:  5'- aCGGGuUCGGCGGUGA--UAGCCGGUGc -3'
miRNA:   3'- -GUUC-GGCCGCCAUUcgGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 28464 0.71 0.629127
Target:  5'- -cAGCCuugGGCGGUGcaCCAGCgGGUGGu -3'
miRNA:   3'- guUCGG---CCGCCAUucGGUCGgCCACU- -5'
14299 3' -59 NC_003521.1 + 240634 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 978 0.76 0.323315
Target:  5'- gAGGCCGGCGGUcugcucccguGGGCCGGCCGu--- -3'
miRNA:   3'- gUUCGGCCGCCA----------UUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 148673 0.68 0.75395
Target:  5'- gCGAGCCGGUGGaAGG--AGCCGG-GAa -3'
miRNA:   3'- -GUUCGGCCGCCaUUCggUCGGCCaCU- -5'
14299 3' -59 NC_003521.1 + 164211 0.69 0.716498
Target:  5'- gCGGGgCGGCGGUGguagcggcGGCUGGaCGGUGGa -3'
miRNA:   3'- -GUUCgGCCGCCAU--------UCGGUCgGCCACU- -5'
14299 3' -59 NC_003521.1 + 198264 0.71 0.619333
Target:  5'- -cGGCCGcCGGacAGCCAGCCGGg-- -3'
miRNA:   3'- guUCGGCcGCCauUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 185624 0.77 0.302715
Target:  5'- gGAGCCGGCGGacuGCCAucGCCGGUc- -3'
miRNA:   3'- gUUCGGCCGCCauuCGGU--CGGCCAcu -5'
14299 3' -59 NC_003521.1 + 195193 0.69 0.697343
Target:  5'- gGAGCCGGCGGcgguGGCCGucugcGUCGGcgcUGAu -3'
miRNA:   3'- gUUCGGCCGCCau--UCGGU-----CGGCC---ACU- -5'
14299 3' -59 NC_003521.1 + 167995 0.8 0.190773
Target:  5'- cCAGGCCGucGCGGUGAGCCugcugcuGCUGGUGGu -3'
miRNA:   3'- -GUUCGGC--CGCCAUUCGGu------CGGCCACU- -5'
14299 3' -59 NC_003521.1 + 187604 0.71 0.629127
Target:  5'- --uGCCGGUGGgcacGGCCuGCCGGg-- -3'
miRNA:   3'- guuCGGCCGCCau--UCGGuCGGCCacu -5'
14299 3' -59 NC_003521.1 + 38283 0.7 0.677988
Target:  5'- gAGGCCGGCgcgcagcaGGUGcgagagcucgucGGCCAGCgGGUaGAg -3'
miRNA:   3'- gUUCGGCCG--------CCAU------------UCGGUCGgCCA-CU- -5'
14299 3' -59 NC_003521.1 + 155399 0.71 0.599777
Target:  5'- gAGGCCGGCGGggGGCUGGgcaCCGGa-- -3'
miRNA:   3'- gUUCGGCCGCCauUCGGUC---GGCCacu -5'
14299 3' -59 NC_003521.1 + 223067 0.72 0.560978
Target:  5'- --cGCCGGCGGUAcGGCCAGuuccCCGGc-- -3'
miRNA:   3'- guuCGGCCGCCAU-UCGGUC----GGCCacu -5'
14299 3' -59 NC_003521.1 + 196051 0.72 0.532332
Target:  5'- aGAGCaccgGGCGGaAGGCCGGCgaGGUGGa -3'
miRNA:   3'- gUUCGg---CCGCCaUUCGGUCGg-CCACU- -5'
14299 3' -59 NC_003521.1 + 119214 0.75 0.407542
Target:  5'- --cGCCaGGUGGUGagcgccAGCCAGCUGGUGu -3'
miRNA:   3'- guuCGG-CCGCCAU------UCGGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 101922 0.68 0.789829
Target:  5'- cCGAGCCGGCGua---CUcGCCGGUGGg -3'
miRNA:   3'- -GUUCGGCCGCcauucGGuCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 52693 0.68 0.772118
Target:  5'- --cGUCGGCGGU--GCCAGCCGc--- -3'
miRNA:   3'- guuCGGCCGCCAuuCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 123676 0.69 0.735388
Target:  5'- gGAGCCGGCGcGcugcGGCguGgCGGUGGa -3'
miRNA:   3'- gUUCGGCCGC-Cau--UCGguCgGCCACU- -5'
14299 3' -59 NC_003521.1 + 86349 0.69 0.716498
Target:  5'- --uGCCGGCGcc-GGCgGuGCCGGUGAc -3'
miRNA:   3'- guuCGGCCGCcauUCGgU-CGGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.