miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 3' -57.3 NC_003521.1 + 149004 0.66 0.937806
Target:  5'- aGCAaaacccggauGGGGGGuGcAGGGugGGGgugCCCa -3'
miRNA:   3'- aCGU----------UCCUCCuCuUUCCugCCCg--GGG- -5'
14300 3' -57.3 NC_003521.1 + 214282 0.66 0.937806
Target:  5'- cUGguAGGAGGAGGccAGGAU--GCCCa -3'
miRNA:   3'- -ACguUCCUCCUCUu-UCCUGccCGGGg -5'
14300 3' -57.3 NC_003521.1 + 77285 0.66 0.937806
Target:  5'- aGCAGGGuGGAGuagcacAGGuugUGGGCCa- -3'
miRNA:   3'- aCGUUCCuCCUCuu----UCCu--GCCCGGgg -5'
14300 3' -57.3 NC_003521.1 + 173370 0.66 0.937806
Target:  5'- ---cGGGAGGAGAuggagugcuggGAGGAgcGGCUCCg -3'
miRNA:   3'- acguUCCUCCUCU-----------UUCCUgcCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 136032 0.66 0.937806
Target:  5'- aGCGAGGuggcGGuGAucgAGGGGCagguaaaGGCCCCc -3'
miRNA:   3'- aCGUUCCu---CCuCU---UUCCUGc------CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 90244 0.66 0.937806
Target:  5'- aGUGAGGAGGAGGAGccGCGccGCCgCCg -3'
miRNA:   3'- aCGUUCCUCCUCUUUccUGCc-CGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 122710 0.66 0.937342
Target:  5'- gGCGGGGcuGGAGGcggucguggucguGGGcGACGGcGCCgCCg -3'
miRNA:   3'- aCGUUCCu-CCUCU-------------UUC-CUGCC-CGG-GG- -5'
14300 3' -57.3 NC_003521.1 + 90883 0.66 0.93307
Target:  5'- gGaCGGGGAGGGGGacgacGAGGA-GGGCgCg -3'
miRNA:   3'- aC-GUUCCUCCUCU-----UUCCUgCCCGgGg -5'
14300 3' -57.3 NC_003521.1 + 135278 0.66 0.93307
Target:  5'- cGaCGAGGAGGAc-GAGGAcaCGGGCgCg -3'
miRNA:   3'- aC-GUUCCUCCUcuUUCCU--GCCCGgGg -5'
14300 3' -57.3 NC_003521.1 + 29985 0.66 0.93307
Target:  5'- cUGgAcGGAGG-GAGGGGACGaGCgCCa -3'
miRNA:   3'- -ACgUuCCUCCuCUUUCCUGCcCGgGG- -5'
14300 3' -57.3 NC_003521.1 + 141292 0.66 0.93307
Target:  5'- cGCGacAGGuGcAGGugcGGGCGGcGCCCCg -3'
miRNA:   3'- aCGU--UCCuCcUCUuu-CCUGCC-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 197283 0.66 0.93307
Target:  5'- gGCGGGGAGc-GGGAGGGC-GGCUCg -3'
miRNA:   3'- aCGUUCCUCcuCUUUCCUGcCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 19292 0.66 0.93307
Target:  5'- --gAGGGAgGGAGggGGGACGa-CUCCg -3'
miRNA:   3'- acgUUCCU-CCUCuuUCCUGCccGGGG- -5'
14300 3' -57.3 NC_003521.1 + 118878 0.66 0.93307
Target:  5'- gGCGAGGAGGugcAGAAcGuGACGGuGaacgugcacaaCCCCa -3'
miRNA:   3'- aCGUUCCUCC---UCUUuC-CUGCC-C-----------GGGG- -5'
14300 3' -57.3 NC_003521.1 + 218723 0.66 0.93307
Target:  5'- gGCGGcGGGcGAGAAgcggcgucGGGACGGuCCCCc -3'
miRNA:   3'- aCGUU-CCUcCUCUU--------UCCUGCCcGGGG- -5'
14300 3' -57.3 NC_003521.1 + 197069 0.66 0.93307
Target:  5'- cUGCAAGGucgucgagcAGGAG-GAGcGCGaGaGCCCCa -3'
miRNA:   3'- -ACGUUCC---------UCCUCuUUCcUGC-C-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 49650 0.66 0.93307
Target:  5'- aGaCGAGGAacaggaucuGGAGAGGGGcCGGGCg-- -3'
miRNA:   3'- aC-GUUCCU---------CCUCUUUCCuGCCCGggg -5'
14300 3' -57.3 NC_003521.1 + 92104 0.66 0.932584
Target:  5'- gGCAcGGAGGccucgaGGAugccguaccagcuGAGGugGcagcuGGCCCCg -3'
miRNA:   3'- aCGUuCCUCC------UCU-------------UUCCugC-----CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 56016 0.66 0.932096
Target:  5'- aUGCAAGGAagauGAGGuGAGGAUGGGaggggaaugcugCCCg -3'
miRNA:   3'- -ACGUUCCUc---CUCU-UUCCUGCCCg-----------GGG- -5'
14300 3' -57.3 NC_003521.1 + 6493 0.66 0.931606
Target:  5'- gGCAGcGGAGGcggugacggcAGAggcucaccggugacGAGGGCGGucugcgucccGCCCCa -3'
miRNA:   3'- aCGUU-CCUCC----------UCU--------------UUCCUGCC----------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.