miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 3' -57.3 NC_003521.1 + 240649 0.66 0.928112
Target:  5'- gUGCAGGGAGGccGAAGcGGC-GGCCg- -3'
miRNA:   3'- -ACGUUCCUCCucUUUC-CUGcCCGGgg -5'
14300 3' -57.3 NC_003521.1 + 239107 0.71 0.702071
Target:  5'- cGCGagGGGAGGGGAccGGAUGGaGUCgCg -3'
miRNA:   3'- aCGU--UCCUCCUCUuuCCUGCC-CGGgG- -5'
14300 3' -57.3 NC_003521.1 + 236420 0.66 0.928618
Target:  5'- aGCcGGGAGGAGGAGGuccacgagcgggugaGugagcgagcgggacGCGGGCCgCg -3'
miRNA:   3'- aCGuUCCUCCUCUUUC---------------C--------------UGCCCGGgG- -5'
14300 3' -57.3 NC_003521.1 + 235590 0.72 0.653248
Target:  5'- gUGC-GGGAGGAcGAGAGGcggacucggGCGGaGCCCg -3'
miRNA:   3'- -ACGuUCCUCCU-CUUUCC---------UGCC-CGGGg -5'
14300 3' -57.3 NC_003521.1 + 219265 0.67 0.87988
Target:  5'- aGCAGGGcccgcAGGGGcu-GGcacaugaGCGGGCCCa -3'
miRNA:   3'- aCGUUCC-----UCCUCuuuCC-------UGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 218723 0.66 0.93307
Target:  5'- gGCGGcGGGcGAGAAgcggcgucGGGACGGuCCCCc -3'
miRNA:   3'- aCGUU-CCUcCUCUU--------UCCUGCCcGGGG- -5'
14300 3' -57.3 NC_003521.1 + 216900 0.68 0.864396
Target:  5'- cGCAGGuGAGGAGGgcgcgguggcagcgGAGG-CGGucgaCCCCa -3'
miRNA:   3'- aCGUUC-CUCCUCU--------------UUCCuGCCc---GGGG- -5'
14300 3' -57.3 NC_003521.1 + 216738 0.72 0.663074
Target:  5'- gGCGGaGAGGGGAugAGGcGACGGGCUCa -3'
miRNA:   3'- aCGUUcCUCCUCU--UUC-CUGCCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 215801 0.71 0.721274
Target:  5'- aGCGAGGAgccGGAGGAaaAGGACGgcagcgauaacaGGCUCUg -3'
miRNA:   3'- aCGUUCCU---CCUCUU--UCCUGC------------CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 214282 0.66 0.937806
Target:  5'- cUGguAGGAGGAGGccAGGAU--GCCCa -3'
miRNA:   3'- -ACguUCCUCCUCUu-UCCUGccCGGGg -5'
14300 3' -57.3 NC_003521.1 + 212699 0.69 0.811722
Target:  5'- gGCAAGGcuGGu---GGGuCGGGCCUCg -3'
miRNA:   3'- aCGUUCCu-CCucuuUCCuGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 209993 0.68 0.836269
Target:  5'- cGCAAGGcgcccguGGAGuucgcGGGuuucgccgGCGGGCCCUc -3'
miRNA:   3'- aCGUUCCu------CCUCuu---UCC--------UGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 204724 0.66 0.91698
Target:  5'- gGCGGGGAGGGuggcGAGGGugGugauggaGGCgCCg -3'
miRNA:   3'- aCGUUCCUCCUc---UUUCCugC-------CCGgGG- -5'
14300 3' -57.3 NC_003521.1 + 202066 0.69 0.828249
Target:  5'- aGCAuGGcGGAcGAcagaccGGGACGGGgCCCg -3'
miRNA:   3'- aCGUuCCuCCU-CUu-----UCCUGCCCgGGG- -5'
14300 3' -57.3 NC_003521.1 + 199990 0.69 0.820065
Target:  5'- aGCAAGGuGuccau-GGcGCGGGCCCCg -3'
miRNA:   3'- aCGUUCCuCcucuuuCC-UGCCCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 197418 0.7 0.758762
Target:  5'- cGCAguAGGaAGGGGAGGGcGCGGGCgagUCCg -3'
miRNA:   3'- aCGU--UCC-UCCUCUUUCcUGCCCG---GGG- -5'
14300 3' -57.3 NC_003521.1 + 197283 0.66 0.93307
Target:  5'- gGCGGGGAGc-GGGAGGGC-GGCUCg -3'
miRNA:   3'- aCGUUCCUCcuCUUUCCUGcCCGGGg -5'
14300 3' -57.3 NC_003521.1 + 197179 0.71 0.692384
Target:  5'- gGCAGGGcuGGAGGc-GGugGcGGUCCCa -3'
miRNA:   3'- aCGUUCCu-CCUCUuuCCugC-CCGGGG- -5'
14300 3' -57.3 NC_003521.1 + 197069 0.66 0.93307
Target:  5'- cUGCAAGGucgucgagcAGGAG-GAGcGCGaGaGCCCCa -3'
miRNA:   3'- -ACGUUCC---------UCCUCuUUCcUGC-C-CGGGG- -5'
14300 3' -57.3 NC_003521.1 + 195361 0.67 0.911911
Target:  5'- gGCcGGGugaAGGuGAcgcccGAGGACGaGGCgCCCg -3'
miRNA:   3'- aCGuUCC---UCCuCU-----UUCCUGC-CCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.