Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14300 | 3' | -57.3 | NC_003521.1 | + | 40955 | 1.12 | 0.002236 |
Target: 5'- cUGCAAGGAGGAGAAAGGACGGGCCCCg -3' miRNA: 3'- -ACGUUCCUCCUCUUUCCUGCCCGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 67697 | 0.7 | 0.740193 |
Target: 5'- aGCGAGGAGGAaGAGGGugaGGaaguGCCUCa -3' miRNA: 3'- aCGUUCCUCCUcUUUCCug-CC----CGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 197418 | 0.7 | 0.758762 |
Target: 5'- cGCAguAGGaAGGGGAGGGcGCGGGCgagUCCg -3' miRNA: 3'- aCGU--UCC-UCCUCUUUCcUGCCCG---GGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 136032 | 0.66 | 0.937806 |
Target: 5'- aGCGAGGuggcGGuGAucgAGGGGCagguaaaGGCCCCc -3' miRNA: 3'- aCGUUCCu---CCuCU---UUCCUGc------CCGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 188509 | 0.74 | 0.517124 |
Target: 5'- cGcCGAGauacGAGGAGGccGG-CGGGCCCCa -3' miRNA: 3'- aC-GUUC----CUCCUCUuuCCuGCCCGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 148627 | 0.74 | 0.536083 |
Target: 5'- aGCAGGGGcGGGGGAGGGGaGGccagggcaucGCCCCg -3' miRNA: 3'- aCGUUCCU-CCUCUUUCCUgCC----------CGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 33605 | 0.73 | 0.583449 |
Target: 5'- cGCAcGGGAGGAGAggaaccgGAGGACGauGCCgCCg -3' miRNA: 3'- aCGU-UCCUCCUCU-------UUCCUGCc-CGG-GG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 4212 | 0.73 | 0.584426 |
Target: 5'- aGCgGAGGGcGGGAAGGGuguCGGaGCCCCg -3' miRNA: 3'- aCG-UUCCUcCUCUUUCCu--GCC-CGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 169687 | 0.72 | 0.633556 |
Target: 5'- aGCAgAGGAGGAGgcGGcGACGaGUCCCc -3' miRNA: 3'- aCGU-UCCUCCUCuuUC-CUGCcCGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 155470 | 0.7 | 0.740193 |
Target: 5'- aGgAGGGGGuGAGAGAGacgccggccugcGGCGGGCCgCg -3' miRNA: 3'- aCgUUCCUC-CUCUUUC------------CUGCCCGGgG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 164437 | 0.72 | 0.653248 |
Target: 5'- gGCAAGGuGGAGGGcgccGCGGGCCUg -3' miRNA: 3'- aCGUUCCuCCUCUUucc-UGCCCGGGg -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 49912 | 0.72 | 0.623705 |
Target: 5'- cGUAAGaaAGGAGAGGGGGCGGcagcuuCCCCg -3' miRNA: 3'- aCGUUCc-UCCUCUUUCCUGCCc-----GGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 148389 | 0.8 | 0.278192 |
Target: 5'- gUGCGGGGAGGcuGggGGGugaGGGCUCCa -3' miRNA: 3'- -ACGUUCCUCCu-CuuUCCug-CCCGGGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 239107 | 0.71 | 0.702071 |
Target: 5'- cGCGagGGGAGGGGAccGGAUGGaGUCgCg -3' miRNA: 3'- aCGU--UCCUCCUCUuuCCUGCC-CGGgG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 19088 | 0.76 | 0.413509 |
Target: 5'- cGUGAGGAGGAGGgggacgggGAGGgagacgacgcgggugGCGGGCCgCCg -3' miRNA: 3'- aCGUUCCUCCUCU--------UUCC---------------UGCCCGG-GG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 18972 | 0.73 | 0.584426 |
Target: 5'- -aCGAGGAGGGGGucGAGGACGcGCCgCg -3' miRNA: 3'- acGUUCCUCCUCU--UUCCUGCcCGGgG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 75755 | 0.71 | 0.711703 |
Target: 5'- --uGGGGAGGGGc-GGGAuaCGGGCCCg -3' miRNA: 3'- acgUUCCUCCUCuuUCCU--GCCCGGGg -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 44528 | 0.7 | 0.757843 |
Target: 5'- cGCAGGGGaaucggaacacGGGGGGAGGaacgagacucaccGCGGGUaCCCg -3' miRNA: 3'- aCGUUCCU-----------CCUCUUUCC-------------UGCCCG-GGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 156976 | 0.75 | 0.480061 |
Target: 5'- --gGAGGAGGAGGAgucgauggagGGGACGGGUaCCUa -3' miRNA: 3'- acgUUCCUCCUCUU----------UCCUGCCCG-GGG- -5' |
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14300 | 3' | -57.3 | NC_003521.1 | + | 183271 | 0.74 | 0.555279 |
Target: 5'- cGCGAGGAcGAG-GAGGAUuucgGGGCCUCg -3' miRNA: 3'- aCGUUCCUcCUCuUUCCUG----CCCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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