miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 86147 0.75 0.690766
Target:  5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3'
miRNA:   3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 193152 0.78 0.512901
Target:  5'- cCGUGUCGUCggcgcacaGCAUCUCAGGAGCCGg -3'
miRNA:   3'- -GCGCAGCGGgg------CGUAGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 185775 0.66 0.989673
Target:  5'- cCGCGauggagCGCaagaCGCGUCUCucGGAGCCGc -3'
miRNA:   3'- -GCGCa-----GCGgg--GCGUAGAGu-UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 95125 0.67 0.97944
Target:  5'- aGCGUgGCCuugaagagcuCCGCGUCgugCGAGAGCa- -3'
miRNA:   3'- gCGCAgCGG----------GGCGUAGa--GUUUUUGgc -5'
14308 3' -53.8 NC_003521.1 + 205435 0.66 0.985223
Target:  5'- uCGCG-CGgCCCGCGUcCUC----GCCGa -3'
miRNA:   3'- -GCGCaGCgGGGCGUA-GAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 80277 0.67 0.983454
Target:  5'- aGUaUCGCgCCGCGUCUCugucuCCGc -3'
miRNA:   3'- gCGcAGCGgGGCGUAGAGuuuuuGGC- -5'
14308 3' -53.8 NC_003521.1 + 98084 0.67 0.981528
Target:  5'- cCGuCGUCGCCuUCGUA-CUCGAAgGACCa -3'
miRNA:   3'- -GC-GCAGCGG-GGCGUaGAGUUU-UUGGc -5'
14308 3' -53.8 NC_003521.1 + 139327 0.68 0.969314
Target:  5'- cCGCGUCugGCCgCCGCugCUCGAGcACCu -3'
miRNA:   3'- -GCGCAG--CGG-GGCGuaGAGUUUuUGGc -5'
14308 3' -53.8 NC_003521.1 + 43279 0.68 0.963098
Target:  5'- aGC-UCGCCgCCGC-UCUCGuccGCCGa -3'
miRNA:   3'- gCGcAGCGG-GGCGuAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 136004 0.68 0.959681
Target:  5'- cCGCGUCaCgCCCGUGUuCUCGGGGAUCa -3'
miRNA:   3'- -GCGCAGcG-GGGCGUA-GAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 2358 0.69 0.93935
Target:  5'- cCGCGUcucCGCCCCGCccg-CcGAGGCCGc -3'
miRNA:   3'- -GCGCA---GCGGGGCGuagaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 109758 0.7 0.913382
Target:  5'- cCGCGgucgcCGCCaCCGCGUC-CGAGGcccGCCGc -3'
miRNA:   3'- -GCGCa----GCGG-GGCGUAGaGUUUU---UGGC- -5'
14308 3' -53.8 NC_003521.1 + 32524 0.71 0.874804
Target:  5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3'
miRNA:   3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5'
14308 3' -53.8 NC_003521.1 + 121025 0.73 0.785735
Target:  5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 116215 0.66 0.990897
Target:  5'- uCGcCGUCGCCgCCGCuucgucgucCUCGucGGCCa -3'
miRNA:   3'- -GC-GCAGCGG-GGCGua-------GAGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 99730 0.66 0.990897
Target:  5'- gGCGUCGUCgCGCAcccagccgCUCAuuuGGCCc -3'
miRNA:   3'- gCGCAGCGGgGCGUa-------GAGUuu-UUGGc -5'
14308 3' -53.8 NC_003521.1 + 4372 0.66 0.990897
Target:  5'- uCGCGgcccgCGUCCCGCucgCUCAcucACCc -3'
miRNA:   3'- -GCGCa----GCGGGGCGua-GAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 152775 0.68 0.959681
Target:  5'- gGCGUCGCCUccugcgccuugCGCAccgcCUCGGucACCGg -3'
miRNA:   3'- gCGCAGCGGG-----------GCGUa---GAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 46080 0.7 0.924454
Target:  5'- uCGCGaCGCCCgGCGUCgCA--GACCu -3'
miRNA:   3'- -GCGCaGCGGGgCGUAGaGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 80 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.