miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 240380 0.76 0.604277
Target:  5'- ---uGCCUCACCG-GCUGGCUu-ACCg -3'
miRNA:   3'- aaguUGGAGUGGCaCGACCGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 239750 0.68 0.944716
Target:  5'- cUUCGGCCUCGCCcgccgaugGUcGGUCGAGCUg -3'
miRNA:   3'- -AAGUUGGAGUGGca------CGaCCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 239482 0.67 0.975707
Target:  5'- gUUCAGCCccaGCCG-GUUGGaCCGAuacaGCCg -3'
miRNA:   3'- -AAGUUGGag-UGGCaCGACC-GGUU----UGG- -5'
14311 5' -53.6 NC_003521.1 + 236566 0.71 0.867046
Target:  5'- uUUCGugCUCGCCGUGU--GCCAucucacggcAGCCa -3'
miRNA:   3'- -AAGUugGAGUGGCACGacCGGU---------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 234331 0.66 0.978122
Target:  5'- cUCuGCCgUCACCGccuccGCU-GCCGGACCu -3'
miRNA:   3'- aAGuUGG-AGUGGCa----CGAcCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 233481 0.66 0.980355
Target:  5'- uUUCAGCCUgGCCuGgauCUGGuucCCGAGCCu -3'
miRNA:   3'- -AAGUUGGAgUGG-Cac-GACC---GGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 229074 0.69 0.930316
Target:  5'- gUCAcCCaggCGgCGUGgaUGGCCAAACCg -3'
miRNA:   3'- aAGUuGGa--GUgGCACg-ACCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 226220 0.66 0.987621
Target:  5'- aUCAGCCgcauaaUCACCGUGCcguaGCCcGGCg -3'
miRNA:   3'- aAGUUGG------AGUGGCACGac--CGGuUUGg -5'
14311 5' -53.6 NC_003521.1 + 223674 0.69 0.930316
Target:  5'- cUCGGCCUCgcGCCGcUGCUGGa---ACCa -3'
miRNA:   3'- aAGUUGGAG--UGGC-ACGACCgguuUGG- -5'
14311 5' -53.6 NC_003521.1 + 222692 0.69 0.913776
Target:  5'- cUCGACCUCG--GUGC-GGCCGGGCg -3'
miRNA:   3'- aAGUUGGAGUggCACGaCCGGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 222126 0.67 0.970302
Target:  5'- -aCAGCCggaucgCGCCG-GCcaUGGCgAAACCc -3'
miRNA:   3'- aaGUUGGa-----GUGGCaCG--ACCGgUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 221659 0.7 0.88152
Target:  5'- gUCGGCCaccagCGCCGUGCUcucGGUCAccacGCCg -3'
miRNA:   3'- aAGUUGGa----GUGGCACGA---CCGGUu---UGG- -5'
14311 5' -53.6 NC_003521.1 + 218408 0.66 0.982215
Target:  5'- cUCGGCCaCGCCGcGCagcaUGGCCAGcgacagcggcggcACCa -3'
miRNA:   3'- aAGUUGGaGUGGCaCG----ACCGGUU-------------UGG- -5'
14311 5' -53.6 NC_003521.1 + 214267 0.66 0.982413
Target:  5'- aUCGcCCUgaCGCCGUcGCUGGCauaAAGCg -3'
miRNA:   3'- aAGUuGGA--GUGGCA-CGACCGg--UUUGg -5'
14311 5' -53.6 NC_003521.1 + 211923 0.7 0.907789
Target:  5'- -cCAGCCUCAUCGUGCcGGaCGuuuCCa -3'
miRNA:   3'- aaGUUGGAGUGGCACGaCCgGUuu-GG- -5'
14311 5' -53.6 NC_003521.1 + 211450 0.7 0.901566
Target:  5'- cUCGGCCUCGCgGU-CgGGgCAGGCCa -3'
miRNA:   3'- aAGUUGGAGUGgCAcGaCCgGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 208722 0.72 0.797669
Target:  5'- aUCAGCCgCGCCGccaaacgcauggcGCUGGCCGuGGCCa -3'
miRNA:   3'- aAGUUGGaGUGGCa------------CGACCGGU-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 206668 0.71 0.85949
Target:  5'- -gCGACCUCAaggccuUCGUGCgcgugGGCCuGGCCc -3'
miRNA:   3'- aaGUUGGAGU------GGCACGa----CCGGuUUGG- -5'
14311 5' -53.6 NC_003521.1 + 205874 0.69 0.921761
Target:  5'- -cCGACCUCugCGUGCgccgcgacuacgagGGUCugcGCCg -3'
miRNA:   3'- aaGUUGGAGugGCACGa-------------CCGGuu-UGG- -5'
14311 5' -53.6 NC_003521.1 + 204825 0.67 0.967298
Target:  5'- ---cACCUCcgucGCCGUcGCUGaCCAAGCCc -3'
miRNA:   3'- aaguUGGAG----UGGCA-CGACcGGUUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.