miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 3' -57 NC_003521.1 + 195574 0.65 0.948421
Target:  5'- aCCAGCa--GCGGUUaaccgacgcuacaGCUCCAGGUGc -3'
miRNA:   3'- cGGUCGgcaUGUCAAg------------CGAGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 88525 0.66 0.947597
Target:  5'- -gCAGCCGUGCAGg-CGCaccgaaacggccuccUCgGGGCa -3'
miRNA:   3'- cgGUCGGCAUGUCaaGCG---------------AGgUCCGc -5'
14326 3' -57 NC_003521.1 + 88 0.66 0.945924
Target:  5'- gGCCGGCCGguCGGacgUGUUUCGGGCc -3'
miRNA:   3'- -CGGUCGGCauGUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 38794 0.66 0.945924
Target:  5'- aCCAGCgGUugAGUggacaaCGCagCAGGUGu -3'
miRNA:   3'- cGGUCGgCAugUCAa-----GCGagGUCCGC- -5'
14326 3' -57 NC_003521.1 + 200316 0.66 0.945924
Target:  5'- gGCCGGCCGguCGGacgUGUUUCGGGCc -3'
miRNA:   3'- -CGGUCGGCauGUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 240637 0.66 0.945924
Target:  5'- gGCCGGCCGguCGGacgUGUUUCGGGCc -3'
miRNA:   3'- -CGGUCGGCauGUCaa-GCGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 196972 0.66 0.945924
Target:  5'- aGCCGGCCGgggcgccugugACGGgccCGCggCC-GGCGg -3'
miRNA:   3'- -CGGUCGGCa----------UGUCaa-GCGa-GGuCCGC- -5'
14326 3' -57 NC_003521.1 + 173913 0.66 0.945924
Target:  5'- aGCCGGCCGUgaACuGgauggacUCGC-CCuuGGGCGu -3'
miRNA:   3'- -CGGUCGGCA--UGuCa------AGCGaGG--UCCGC- -5'
14326 3' -57 NC_003521.1 + 198276 0.66 0.944645
Target:  5'- aGCCAGCCGggcgucGCGGaggaccgcugggggGCUCCGGGUu -3'
miRNA:   3'- -CGGUCGGCa-----UGUCaag-----------CGAGGUCCGc -5'
14326 3' -57 NC_003521.1 + 236486 0.66 0.941587
Target:  5'- cGCCGGCg--GCGGUg-GCgCCAGGCa -3'
miRNA:   3'- -CGGUCGgcaUGUCAagCGaGGUCCGc -5'
14326 3' -57 NC_003521.1 + 21561 0.66 0.941587
Target:  5'- uGCCAGCCccUGCGGgcccUGCUCUAcccGGCGc -3'
miRNA:   3'- -CGGUCGGc-AUGUCaa--GCGAGGU---CCGC- -5'
14326 3' -57 NC_003521.1 + 128428 0.66 0.941587
Target:  5'- gGCCGGUCGgcGCAcugCGCcagCCAGGUGg -3'
miRNA:   3'- -CGGUCGGCa-UGUcaaGCGa--GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 224750 0.66 0.941587
Target:  5'- gGCCAGCgCGU-CGGg--GCUCC-GGCa -3'
miRNA:   3'- -CGGUCG-GCAuGUCaagCGAGGuCCGc -5'
14326 3' -57 NC_003521.1 + 141933 0.66 0.939791
Target:  5'- cGCCuGaCCGUGCAGcgCGUgggcgcccaccugCUGGGCGa -3'
miRNA:   3'- -CGGuC-GGCAUGUCaaGCGa------------GGUCCGC- -5'
14326 3' -57 NC_003521.1 + 201229 0.66 0.93888
Target:  5'- gGCCGGCCGUACGGcuucuacgCGCgcaucacgCCGcgcagccagauggccGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCaa------GCGa-------GGU---------------CCGC- -5'
14326 3' -57 NC_003521.1 + 1001 0.66 0.93888
Target:  5'- gGCCGGCCGUACGGcuucuacgCGCgcaucacgCCGcgcagccagauggccGGCGu -3'
miRNA:   3'- -CGGUCGGCAUGUCaa------GCGa-------GGU---------------CCGC- -5'
14326 3' -57 NC_003521.1 + 66780 0.66 0.937031
Target:  5'- cGCCGGCCcagacggACGGUUCGCU---GGUGa -3'
miRNA:   3'- -CGGUCGGca-----UGUCAAGCGAgguCCGC- -5'
14326 3' -57 NC_003521.1 + 165870 0.66 0.937031
Target:  5'- uCCAGCgGUGCAcg-UGCUC-GGGCGg -3'
miRNA:   3'- cGGUCGgCAUGUcaaGCGAGgUCCGC- -5'
14326 3' -57 NC_003521.1 + 120043 0.66 0.937031
Target:  5'- cCCGGCCGUGuucaccuggcccCAGUggcaggccgGCaUCCAGGCGc -3'
miRNA:   3'- cGGUCGGCAU------------GUCAag-------CG-AGGUCCGC- -5'
14326 3' -57 NC_003521.1 + 116645 0.66 0.937031
Target:  5'- cCCAGCCG-GCAGg-CGCa-CAGGCGc -3'
miRNA:   3'- cGGUCGGCaUGUCaaGCGagGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.