miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 98358 0.66 0.973556
Target:  5'- cGACGCGGuuucgacccgaagacGACGCGuGCCugaagACGCUGg- -3'
miRNA:   3'- -CUGUGCCu--------------CUGCGCuUGG-----UGCGACac -5'
14326 5' -55.5 NC_003521.1 + 187611 0.66 0.973296
Target:  5'- gGGCACGGccugccGGGCGagcCGGGCCGCGCg--- -3'
miRNA:   3'- -CUGUGCC------UCUGC---GCUUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 161571 0.66 0.973296
Target:  5'- cGACucgcCGGAGaACGUGucGCCGCGCUa-- -3'
miRNA:   3'- -CUGu---GCCUC-UGCGCu-UGGUGCGAcac -5'
14326 5' -55.5 NC_003521.1 + 78523 0.66 0.973296
Target:  5'- cGACGCGGAuucCGCGGACUcccgGCGUgacgGUGc -3'
miRNA:   3'- -CUGUGCCUcu-GCGCUUGG----UGCGa---CAC- -5'
14326 5' -55.5 NC_003521.1 + 89009 0.66 0.973296
Target:  5'- gGACGCGGAcGugGUGGaacacgugccgGCCACcuucauGCUGUa -3'
miRNA:   3'- -CUGUGCCU-CugCGCU-----------UGGUG------CGACAc -5'
14326 5' -55.5 NC_003521.1 + 76551 0.66 0.973296
Target:  5'- -cCGCGGuAGugGaCGAA-CACGCUGUc -3'
miRNA:   3'- cuGUGCC-UCugC-GCUUgGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 86409 0.66 0.967687
Target:  5'- cGACGCgGGGGACGCGcguGCC-CGCc--- -3'
miRNA:   3'- -CUGUG-CCUCUGCGCu--UGGuGCGacac -5'
14326 5' -55.5 NC_003521.1 + 216920 0.66 0.967687
Target:  5'- uGGCAgCGGAGGCGguCGAcCCcauACGCUGUu -3'
miRNA:   3'- -CUGU-GCCUCUGC--GCUuGG---UGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 89242 0.66 0.967387
Target:  5'- aGCGCGGAGAccgcuaaCGCGcGCCGCGUc--- -3'
miRNA:   3'- cUGUGCCUCU-------GCGCuUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 213102 0.66 0.96459
Target:  5'- ----aGGAGACGCGGcucgaCGCGCUGg- -3'
miRNA:   3'- cugugCCUCUGCGCUug---GUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 222644 0.66 0.96459
Target:  5'- gGGC-CGGcAGGCGCGcagcgccuCCACGCUGc- -3'
miRNA:   3'- -CUGuGCC-UCUGCGCuu------GGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 47561 0.66 0.96459
Target:  5'- --aGCGGGGAagacggcgaGCGGGCCACGgUGg- -3'
miRNA:   3'- cugUGCCUCUg--------CGCUUGGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 140951 0.66 0.96459
Target:  5'- uACAUGGAGACgGUGGccGCCAUGCg--- -3'
miRNA:   3'- cUGUGCCUCUG-CGCU--UGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 130747 0.66 0.961291
Target:  5'- gGACGuguCGGcGGGCGCGAgcGCCGCGCcGg- -3'
miRNA:   3'- -CUGU---GCC-UCUGCGCU--UGGUGCGaCac -5'
14326 5' -55.5 NC_003521.1 + 69410 0.66 0.961291
Target:  5'- aGACGCGGGacggugacGGCGCGcaccACCACGgUGg- -3'
miRNA:   3'- -CUGUGCCU--------CUGCGCu---UGGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 8028 0.66 0.961291
Target:  5'- aGACcgcCGGAGGCGUugaGAACCAgcUGCUGa- -3'
miRNA:   3'- -CUGu--GCCUCUGCG---CUUGGU--GCGACac -5'
14326 5' -55.5 NC_003521.1 + 14489 0.66 0.961291
Target:  5'- -cCGCGGGGcGCGCGcACCAUGCa--- -3'
miRNA:   3'- cuGUGCCUC-UGCGCuUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 15055 0.67 0.957785
Target:  5'- cGGCGC-GAG-CGCGAGCgGCGC-GUGc -3'
miRNA:   3'- -CUGUGcCUCuGCGCUUGgUGCGaCAC- -5'
14326 5' -55.5 NC_003521.1 + 71442 0.67 0.957785
Target:  5'- cGAgGCGGGGAuCGCGGgggaagacaugcGCC-CGCUGa- -3'
miRNA:   3'- -CUgUGCCUCU-GCGCU------------UGGuGCGACac -5'
14326 5' -55.5 NC_003521.1 + 204745 0.67 0.957785
Target:  5'- gGugAUGGAGGCGCcgccGCCGCccuGUUGUGu -3'
miRNA:   3'- -CugUGCCUCUGCGcu--UGGUG---CGACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.