miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 123596 0.66 0.908653
Target:  5'- cGGGaGCCGCCGCggccgucagcGGGUgcgacAUcuccaccgccucGGGcGGCGGCa -3'
miRNA:   3'- -CCC-CGGUGGCG----------UCCA-----UA------------CCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 228695 0.66 0.908653
Target:  5'- -aGGCCGCCGCAcccgaaGGAgcGCGGCg -3'
miRNA:   3'- ccCCGGUGGCGUccauacCCU--UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 209558 0.66 0.908653
Target:  5'- cGGGGUgGCgGCGacGGUGgcgGGGGuccgGgGGCg -3'
miRNA:   3'- -CCCCGgUGgCGU--CCAUa--CCCU----UgCCG- -5'
14328 3' -58.9 NC_003521.1 + 128620 0.66 0.908653
Target:  5'- cGGGGCUgagcacgaaguuGCCGUAGGU--GGc--CGGCg -3'
miRNA:   3'- -CCCCGG------------UGGCGUCCAuaCCcuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 119810 0.66 0.908653
Target:  5'- cGGGGCgACaCGguGGUgcgcacgccccaGUGGuaGGCGGUg -3'
miRNA:   3'- -CCCCGgUG-GCguCCA------------UACCc-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 70367 0.66 0.908653
Target:  5'- cGGGGUagaGCCGCAGGcggcgGUaGaGGuAGCGGg -3'
miRNA:   3'- -CCCCGg--UGGCGUCCa----UA-C-CC-UUGCCg -5'
14328 3' -58.9 NC_003521.1 + 126580 0.66 0.908653
Target:  5'- cGGGaaGCCgccgucguGCCGguGGUAgugcGGGAAguCGGUg -3'
miRNA:   3'- -CCC--CGG--------UGGCguCCAUa---CCCUU--GCCG- -5'
14328 3' -58.9 NC_003521.1 + 34308 0.66 0.908653
Target:  5'- aGGGGCuCGCgCGUguacAGGgagcguUGGaAGCGGCg -3'
miRNA:   3'- -CCCCG-GUG-GCG----UCCau----ACCcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 36312 0.66 0.908077
Target:  5'- uGGGGCgCACCcucaguCGGGgcGUGGGGACaugcgacuuuaggGGCu -3'
miRNA:   3'- -CCCCG-GUGGc-----GUCCa-UACCCUUG-------------CCG- -5'
14328 3' -58.9 NC_003521.1 + 46746 0.66 0.906919
Target:  5'- aGGGCCcccagcaGCUGguGGUAgcagcugauacgGGGcACGGUg -3'
miRNA:   3'- cCCCGG-------UGGCguCCAUa-----------CCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 1701 0.66 0.902799
Target:  5'- cGGGGaCGCCGCAGGaaaacccgagcgUGUcggcugauaccGGGAACGauGCc -3'
miRNA:   3'- -CCCCgGUGGCGUCC------------AUA-----------CCCUUGC--CG- -5'
14328 3' -58.9 NC_003521.1 + 201928 0.66 0.902799
Target:  5'- cGGGGaCGCCGCAGGaaaacccgagcgUGUcggcugauaccGGGAACGauGCc -3'
miRNA:   3'- -CCCCgGUGGCGUCC------------AUA-----------CCCUUGC--CG- -5'
14328 3' -58.9 NC_003521.1 + 36834 0.66 0.902799
Target:  5'- cGGGCCGgCGCugcugugccGGGUagagcaccugacGUGGGc-CGGCa -3'
miRNA:   3'- cCCCGGUgGCG---------UCCA------------UACCCuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 70189 0.66 0.902799
Target:  5'- cGGuGGUaCACCgGCAGGUcgGGu--CGGCc -3'
miRNA:   3'- -CC-CCG-GUGG-CGUCCAuaCCcuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 99302 0.66 0.902799
Target:  5'- aGGGcGCagaGCagGCAGGUccGGGAcgaGGCg -3'
miRNA:   3'- -CCC-CGg--UGg-CGUCCAuaCCCUug-CCG- -5'
14328 3' -58.9 NC_003521.1 + 213045 0.66 0.901002
Target:  5'- cGGGCCGgaGUAGGUuUcuuccuccgcgcucGGcGGACGGCa -3'
miRNA:   3'- cCCCGGUggCGUCCAuA--------------CC-CUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 183063 0.66 0.896737
Target:  5'- uGGGaucGUCGCCGUcGGUccuguacUGGGcGACGGCg -3'
miRNA:   3'- -CCC---CGGUGGCGuCCAu------ACCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 122507 0.66 0.896737
Target:  5'- aGGGCCAaCGCGGcGgc-GGGcaggccGGCGGCg -3'
miRNA:   3'- cCCCGGUgGCGUC-CauaCCC------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 76201 0.66 0.896737
Target:  5'- aGGcGGUCGCggUGguGGUAUGaGuGGCGGCg -3'
miRNA:   3'- -CC-CCGGUG--GCguCCAUAC-CcUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 87783 0.66 0.896737
Target:  5'- gGGGGCCGCCucGUcGGUcuc-GGGCGGCc -3'
miRNA:   3'- -CCCCGGUGG--CGuCCAuaccCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.