miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 3' -58.9 NC_003521.1 + 160291 0.7 0.701147
Target:  5'- uGGGCUccGCCGgcaAGGcgGUGGGcACGGCc -3'
miRNA:   3'- cCCCGG--UGGCg--UCCa-UACCCuUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 128803 0.71 0.658018
Target:  5'- cGGGG-CACCGCAGaacguuuucccgGUGGGGcucguagACGGCg -3'
miRNA:   3'- -CCCCgGUGGCGUCca----------UACCCU-------UGCCG- -5'
14328 3' -58.9 NC_003521.1 + 13402 0.73 0.547496
Target:  5'- cGGGcGUCGuuGUGGGggugucagAUGGGAACGGUc -3'
miRNA:   3'- -CCC-CGGUggCGUCCa-------UACCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 123190 0.75 0.430694
Target:  5'- gGGGGaCCguagGCCGCauacggcgccGGGUAggacGGGGGCGGCg -3'
miRNA:   3'- -CCCC-GG----UGGCG----------UCCAUa---CCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 216347 0.69 0.756892
Target:  5'- cGGuGGCCACCGaGGGUGUGaGGcccgUGGUc -3'
miRNA:   3'- -CC-CCGGUGGCgUCCAUAC-CCuu--GCCG- -5'
14328 3' -58.9 NC_003521.1 + 122712 0.7 0.720019
Target:  5'- cGGGGCUggagGCgGUcguGGUcGUGGGcGACGGCg -3'
miRNA:   3'- -CCCCGG----UGgCGu--CCA-UACCC-UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 177980 0.71 0.632885
Target:  5'- cGGGGCaCACCuggggcgguGCGGGUA-GGGcggguaggacggaGGCGGCc -3'
miRNA:   3'- -CCCCG-GUGG---------CGUCCAUaCCC-------------UUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 196742 0.75 0.422308
Target:  5'- uGGGCCAccggcuugacCCGCAGGUA-GGGGuuGCGGa -3'
miRNA:   3'- cCCCGGU----------GGCGUCCAUaCCCU--UGCCg -5'
14328 3' -58.9 NC_003521.1 + 61267 0.7 0.720019
Target:  5'- uGGGGCCAgugUCGCAGGga-GGaagccGAGCGGg -3'
miRNA:   3'- -CCCCGGU---GGCGUCCauaCC-----CUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 149032 0.76 0.373361
Target:  5'- gGGGGugcccaaCCGCCGCccGGGUGUGGGGggauGCGGg -3'
miRNA:   3'- -CCCC-------GGUGGCG--UCCAUACCCU----UGCCg -5'
14328 3' -58.9 NC_003521.1 + 170872 0.71 0.653191
Target:  5'- gGGGGCgGgCGCGGGUGgucaGGcGucCGGCg -3'
miRNA:   3'- -CCCCGgUgGCGUCCAUa---CC-CuuGCCG- -5'
14328 3' -58.9 NC_003521.1 + 178047 0.7 0.701147
Target:  5'- cGGGCC--CGuCAGGcugGUGGGGACGGg -3'
miRNA:   3'- cCCCGGugGC-GUCCa--UACCCUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 174216 0.72 0.604853
Target:  5'- uGGGGUCG-CGCGGGUcgGGcAGgGGCg -3'
miRNA:   3'- -CCCCGGUgGCGUCCAuaCCcUUgCCG- -5'
14328 3' -58.9 NC_003521.1 + 197296 0.72 0.585599
Target:  5'- aGGGCgGCuCGaCGGGagaGGGGGCGGCa -3'
miRNA:   3'- cCCCGgUG-GC-GUCCauaCCCUUGCCG- -5'
14328 3' -58.9 NC_003521.1 + 177792 0.73 0.537147
Target:  5'- cGGGGCCuguCCGCuGGUgggcgucGUGGGcgccgcCGGCu -3'
miRNA:   3'- -CCCCGGu--GGCGuCCA-------UACCCuu----GCCG- -5'
14328 3' -58.9 NC_003521.1 + 31625 0.74 0.465182
Target:  5'- aGGGCCACCGCGGccgacgGUGGGGucaucuggaGGCu -3'
miRNA:   3'- cCCCGGUGGCGUCca----UACCCUug-------CCG- -5'
14328 3' -58.9 NC_003521.1 + 29966 0.69 0.765884
Target:  5'- uGGGCCcuacGCCGguGGUcuggacggaggGaGGGGACGaGCg -3'
miRNA:   3'- cCCCGG----UGGCguCCA-----------UaCCCUUGC-CG- -5'
14328 3' -58.9 NC_003521.1 + 98250 0.69 0.756892
Target:  5'- gGGcGGCCACgGCGGGcacGGcGAGCcuGGCg -3'
miRNA:   3'- -CC-CCGGUGgCGUCCauaCC-CUUG--CCG- -5'
14328 3' -58.9 NC_003521.1 + 1863 0.69 0.737699
Target:  5'- cGGGGCCcggcgccucuaauACCGCagcuggcgcAGGUAccGGGACGGg -3'
miRNA:   3'- -CCCCGG-------------UGGCG---------UCCAUacCCUUGCCg -5'
14328 3' -58.9 NC_003521.1 + 178916 0.7 0.720019
Target:  5'- -cGGUCACCcauCAcGUcgGGGAACGGCg -3'
miRNA:   3'- ccCCGGUGGc--GUcCAuaCCCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.