miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 33209 0.66 0.978828
Target:  5'- aGGCCGgcgagccgCCCAGACgGAucuugcagccggcguUGAgcuggcacaCGCGCa -3'
miRNA:   3'- aCUGGCaa------GGGUCUGgCU---------------ACU---------GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 33085 0.66 0.977939
Target:  5'- aUGGCC-UUCugcacgggcuCCAGccaGCCGAUGACgGCGUa -3'
miRNA:   3'- -ACUGGcAAG----------GGUC---UGGCUACUG-CGCG- -5'
14328 5' -55.5 NC_003521.1 + 65238 0.66 0.977939
Target:  5'- cUGGCCGg-CCUGGAuCCGc--GCGCGCa -3'
miRNA:   3'- -ACUGGCaaGGGUCU-GGCuacUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 31423 0.66 0.977939
Target:  5'- cUGG-CGUgCagCAGGCgGAUGAUGCGCa -3'
miRNA:   3'- -ACUgGCAaGg-GUCUGgCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 208880 0.66 0.977939
Target:  5'- gUGcCUGUUCCUGGAccCCGAgGA-GCGCg -3'
miRNA:   3'- -ACuGGCAAGGGUCU--GGCUaCUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 77805 0.66 0.977939
Target:  5'- -uGCCGUUCUcgCAGAUCauGGUGagcaGCGCGCu -3'
miRNA:   3'- acUGGCAAGG--GUCUGG--CUAC----UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 166667 0.66 0.977939
Target:  5'- cGGCCagcggcaCCUGGGCCccGUGGCGCGCc -3'
miRNA:   3'- aCUGGcaa----GGGUCUGGc-UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 112599 0.66 0.977939
Target:  5'- cGACCGcgCCauccagaAGAUgGAcuucgugGACGCGCu -3'
miRNA:   3'- aCUGGCaaGGg------UCUGgCUa------CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 83594 0.66 0.977939
Target:  5'- -aGCCGcUCCUGGGCCu-UGAUGCaGCg -3'
miRNA:   3'- acUGGCaAGGGUCUGGcuACUGCG-CG- -5'
14328 5' -55.5 NC_003521.1 + 216859 0.66 0.977939
Target:  5'- cGACUGUU-CCAGGCCcGUGGaGCGg -3'
miRNA:   3'- aCUGGCAAgGGUCUGGcUACUgCGCg -5'
14328 5' -55.5 NC_003521.1 + 101187 0.66 0.977713
Target:  5'- cGuCCGcgCCCGgcgggcggaucuuGACCGA-GAUGUGCa -3'
miRNA:   3'- aCuGGCaaGGGU-------------CUGGCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 161478 0.66 0.977713
Target:  5'- cUGGCCGUgUCCUuugcgcgAGACCcuGGUGGguCGCGUg -3'
miRNA:   3'- -ACUGGCA-AGGG-------UCUGG--CUACU--GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 148432 0.66 0.977713
Target:  5'- cGGCCGcgCCgGcggcuccagggguGGCCGGUG-CGUGCu -3'
miRNA:   3'- aCUGGCaaGGgU-------------CUGGCUACuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 125018 0.66 0.977713
Target:  5'- --cCCGcgCCUgagcggcGGACUGcUGACGCGCu -3'
miRNA:   3'- acuGGCaaGGG-------UCUGGCuACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 83628 0.66 0.977713
Target:  5'- -uGCCGUagcccaccUCCgAGACCuucugcaGAUaGGCGCGCu -3'
miRNA:   3'- acUGGCA--------AGGgUCUGG-------CUA-CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 124228 0.66 0.975599
Target:  5'- cGACCGggCCCGauuCCGAaggguUGGgucgcCGCGCg -3'
miRNA:   3'- aCUGGCaaGGGUcu-GGCU-----ACU-----GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 154142 0.66 0.975599
Target:  5'- cGGCCcg--CCAGAUaCGAcGACGCGCu -3'
miRNA:   3'- aCUGGcaagGGUCUG-GCUaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 200732 0.66 0.975599
Target:  5'- -cGCgGUUUUCAGG--GGUGACGCGCg -3'
miRNA:   3'- acUGgCAAGGGUCUggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 102633 0.66 0.975599
Target:  5'- aGAccCCGUUgcCCCAGGCCaucGAgacaGAgGCGCg -3'
miRNA:   3'- aCU--GGCAA--GGGUCUGG---CUa---CUgCGCG- -5'
14328 5' -55.5 NC_003521.1 + 137360 0.66 0.975599
Target:  5'- aGuuCGUcgCCUAcGCCG-UGGCGCGCa -3'
miRNA:   3'- aCugGCAa-GGGUcUGGCuACUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.