miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 5' -57.9 NC_003521.1 + 240374 0.67 0.849514
Target:  5'- -cAACGCUGCcucaccGGCUGG-CUuaCCGCCg- -3'
miRNA:   3'- caUUGCGACG------UCGACCuGA--GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 236345 0.68 0.782517
Target:  5'- ----gGuCUGCucuGCUGGAUcgCCGCCCAg -3'
miRNA:   3'- cauugC-GACGu--CGACCUGa-GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 224428 0.67 0.833744
Target:  5'- -aGGCGCUGCGuGgUGGGCgagCgGUCCAg -3'
miRNA:   3'- caUUGCGACGU-CgACCUGa--GgCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 222601 0.67 0.871758
Target:  5'- -aAACGC-GCAGCUcgcGGaACUCCGCggCCGa -3'
miRNA:   3'- caUUGCGaCGUCGA---CC-UGAGGCG--GGU- -5'
14340 5' -57.9 NC_003521.1 + 217072 0.67 0.857123
Target:  5'- cGUGACGUaGUAGCccaGGAacagucggCCGCCCAg -3'
miRNA:   3'- -CAUUGCGaCGUCGa--CCUga------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 216615 0.77 0.333548
Target:  5'- cUggUGCUGCuGUUGGACgacguUCCGCCCAu -3'
miRNA:   3'- cAuuGCGACGuCGACCUG-----AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 201859 0.68 0.782517
Target:  5'- -gGugGCUGUuuCUGGGCgucgugCUGCCCAg -3'
miRNA:   3'- caUugCGACGucGACCUGa-----GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 200257 0.67 0.833744
Target:  5'- --cAUGCUGUGGCUGGGCUacuaCCGCg-- -3'
miRNA:   3'- cauUGCGACGUCGACCUGA----GGCGggu -5'
14340 5' -57.9 NC_003521.1 + 200052 0.67 0.849514
Target:  5'- -cAACGCUGCcucaccGGCUGG-CUuaCCGCCg- -3'
miRNA:   3'- caUUGCGACG------UCGACCuGA--GGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 199977 0.67 0.871758
Target:  5'- cGUGACGUugUGCAGCaaGGugUCCauggcgcggGCCCc -3'
miRNA:   3'- -CAUUGCG--ACGUCGa-CCugAGG---------CGGGu -5'
14340 5' -57.9 NC_003521.1 + 181459 0.67 0.864539
Target:  5'- -cGGCGUccaGCGGCUGGcGCgCCGCCUg -3'
miRNA:   3'- caUUGCGa--CGUCGACC-UGaGGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 181289 0.67 0.87459
Target:  5'- ----aGCUGCAGCcgGGAagagaagcucaggCCGCCCGc -3'
miRNA:   3'- cauugCGACGUCGa-CCUga-----------GGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 176938 0.67 0.849514
Target:  5'- -cAACuGCUGCAGCUcccGGCgcgCCGCCUc -3'
miRNA:   3'- caUUG-CGACGUCGAc--CUGa--GGCGGGu -5'
14340 5' -57.9 NC_003521.1 + 176488 0.67 0.857122
Target:  5'- -gGGC-CUGCAGCUGGcucaUCUGCUCGu -3'
miRNA:   3'- caUUGcGACGUCGACCug--AGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 173544 0.7 0.687865
Target:  5'- -aGGCGCaGCGGCUGucCUCCcuGCCCGc -3'
miRNA:   3'- caUUGCGaCGUCGACcuGAGG--CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 170084 0.76 0.371551
Target:  5'- cGgcGCGCUGCAGCUGGACgaagUGCCg- -3'
miRNA:   3'- -CauUGCGACGUCGACCUGag--GCGGgu -5'
14340 5' -57.9 NC_003521.1 + 168150 0.68 0.825596
Target:  5'- -gGACGggGCGGaauagGGGCgCCGCCCAg -3'
miRNA:   3'- caUUGCgaCGUCga---CCUGaGGCGGGU- -5'
14340 5' -57.9 NC_003521.1 + 167768 0.72 0.566135
Target:  5'- cGUGGCGCUGguGUUGGAaccggugcuauuuuCUCCGUCa- -3'
miRNA:   3'- -CAUUGCGACguCGACCU--------------GAGGCGGgu -5'
14340 5' -57.9 NC_003521.1 + 166164 0.71 0.628432
Target:  5'- -aGGCGCUGCAGCagaggGGGgUUCaGCCCGu -3'
miRNA:   3'- caUUGCGACGUCGa----CCUgAGG-CGGGU- -5'
14340 5' -57.9 NC_003521.1 + 165883 0.66 0.878775
Target:  5'- -aAGgGCagGCAGaUGGACUCCuuGCCCGu -3'
miRNA:   3'- caUUgCGa-CGUCgACCUGAGG--CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.