Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 88717 | 0.66 | 0.865897 |
Target: 5'- gUACUUGagaCGGGUCuccucgcaGAGCCGGcgcacgucgccgUGGUCCu -3' miRNA: 3'- gAUGGAC---GCCCAG--------UUCGGCC------------ACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 29071 | 0.66 | 0.865897 |
Target: 5'- -gGCCUuccugGUGGGcaUCGAGCUcauGGUGGCgCa -3' miRNA: 3'- gaUGGA-----CGCCC--AGUUCGG---CCACCGgG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 150481 | 0.66 | 0.865897 |
Target: 5'- -cGCCUgGUGGGgcccuUCAGcuuuuacggcGCCGGcggGGCCCu -3' miRNA: 3'- gaUGGA-CGCCC-----AGUU----------CGGCCa--CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 195346 | 0.66 | 0.865897 |
Target: 5'- gCUGCCguggugGUGGGcCGGGUgaaGGUGacGCCCg -3' miRNA: 3'- -GAUGGa-----CGCCCaGUUCGg--CCAC--CGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 125831 | 0.66 | 0.858728 |
Target: 5'- --gUCUGCGcGUCGGGCucgCGGUGGUCg -3' miRNA: 3'- gauGGACGCcCAGUUCG---GCCACCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 1959 | 0.66 | 0.858728 |
Target: 5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3' miRNA: 3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 137518 | 0.66 | 0.858728 |
Target: 5'- -cGCCUGCuGGaGUaccGGCgcgUGGUGGCCUa -3' miRNA: 3'- gaUGGACG-CC-CAgu-UCG---GCCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 206630 | 0.66 | 0.858728 |
Target: 5'- -cGCCcugGUGGGcCAcgauaAGCUGGUcaaguuGGCCCg -3' miRNA: 3'- gaUGGa--CGCCCaGU-----UCGGCCA------CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 202186 | 0.66 | 0.858728 |
Target: 5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3' miRNA: 3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 145361 | 0.66 | 0.858001 |
Target: 5'- gUGCCacgugaUGCacGGGcgCGAGCCGGUgcgcgacGGCCUg -3' miRNA: 3'- gAUGG------ACG--CCCa-GUUCGGCCA-------CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 161499 | 0.66 | 0.851376 |
Target: 5'- -gACCcugGUGGGUCGcguGgUGG-GGCCCa -3' miRNA: 3'- gaUGGa--CGCCCAGUu--CgGCCaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 106569 | 0.66 | 0.843847 |
Target: 5'- -aACCUGCaccGGGUCAcccuGGCCGaGggcGGCgCg -3' miRNA: 3'- gaUGGACG---CCCAGU----UCGGC-Ca--CCGgG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 112676 | 0.66 | 0.836148 |
Target: 5'- cCUGCCUGCaGGccuucgcCGAGCgCGGgccGCCCu -3' miRNA: 3'- -GAUGGACGcCCa------GUUCG-GCCac-CGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 67664 | 0.66 | 0.836148 |
Target: 5'- aCUGCCUGUGGcUgGAGCUGaa-GCCCa -3' miRNA: 3'- -GAUGGACGCCcAgUUCGGCcacCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 138393 | 0.66 | 0.828282 |
Target: 5'- -gGCCUGCGGcgcGUCuggaucGCCGuGUGGaCCa -3' miRNA: 3'- gaUGGACGCC---CAGuu----CGGC-CACCgGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 45729 | 0.66 | 0.828282 |
Target: 5'- uCUGCgggacGCGGGUCAGGCCGGguuuuguaGCgCg -3' miRNA: 3'- -GAUGga---CGCCCAGUUCGGCCac------CGgG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 207830 | 0.66 | 0.828282 |
Target: 5'- -aGCCUGCGGGgcuUCAuccGCCaG-GGCUCc -3' miRNA: 3'- gaUGGACGCCC---AGUu--CGGcCaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 204125 | 0.66 | 0.828282 |
Target: 5'- -cACCUGCucGGGcCAGgcGCCGGa-GCCCg -3' miRNA: 3'- gaUGGACG--CCCaGUU--CGGCCacCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 43821 | 0.67 | 0.820258 |
Target: 5'- -aGCagcCGGGUCAGccgccGCCGGccgcgGGCCCg -3' miRNA: 3'- gaUGgacGCCCAGUU-----CGGCCa----CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 82746 | 0.67 | 0.820258 |
Target: 5'- -cGCUUGCGGGaCGAGaucacgcgcgaCCGGcgGGCCg -3' miRNA: 3'- gaUGGACGCCCaGUUC-----------GGCCa-CCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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