miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 88717 0.66 0.865897
Target:  5'- gUACUUGagaCGGGUCuccucgcaGAGCCGGcgcacgucgccgUGGUCCu -3'
miRNA:   3'- gAUGGAC---GCCCAG--------UUCGGCC------------ACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 29071 0.66 0.865897
Target:  5'- -gGCCUuccugGUGGGcaUCGAGCUcauGGUGGCgCa -3'
miRNA:   3'- gaUGGA-----CGCCC--AGUUCGG---CCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 150481 0.66 0.865897
Target:  5'- -cGCCUgGUGGGgcccuUCAGcuuuuacggcGCCGGcggGGCCCu -3'
miRNA:   3'- gaUGGA-CGCCC-----AGUU----------CGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195346 0.66 0.865897
Target:  5'- gCUGCCguggugGUGGGcCGGGUgaaGGUGacGCCCg -3'
miRNA:   3'- -GAUGGa-----CGCCCaGUUCGg--CCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 125831 0.66 0.858728
Target:  5'- --gUCUGCGcGUCGGGCucgCGGUGGUCg -3'
miRNA:   3'- gauGGACGCcCAGUUCG---GCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 137518 0.66 0.858728
Target:  5'- -cGCCUGCuGGaGUaccGGCgcgUGGUGGCCUa -3'
miRNA:   3'- gaUGGACG-CC-CAgu-UCG---GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 1959 0.66 0.858728
Target:  5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 206630 0.66 0.858728
Target:  5'- -cGCCcugGUGGGcCAcgauaAGCUGGUcaaguuGGCCCg -3'
miRNA:   3'- gaUGGa--CGCCCaGU-----UCGGCCA------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 202186 0.66 0.858728
Target:  5'- -gACCcGCGGGaCAcccAGCCGGcGcGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGU---UCGGCCaC-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 145361 0.66 0.858001
Target:  5'- gUGCCacgugaUGCacGGGcgCGAGCCGGUgcgcgacGGCCUg -3'
miRNA:   3'- gAUGG------ACG--CCCa-GUUCGGCCA-------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 161499 0.66 0.851376
Target:  5'- -gACCcugGUGGGUCGcguGgUGG-GGCCCa -3'
miRNA:   3'- gaUGGa--CGCCCAGUu--CgGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 106569 0.66 0.843847
Target:  5'- -aACCUGCaccGGGUCAcccuGGCCGaGggcGGCgCg -3'
miRNA:   3'- gaUGGACG---CCCAGU----UCGGC-Ca--CCGgG- -5'
14360 5' -59.9 NC_003521.1 + 67664 0.66 0.836148
Target:  5'- aCUGCCUGUGGcUgGAGCUGaa-GCCCa -3'
miRNA:   3'- -GAUGGACGCCcAgUUCGGCcacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 112676 0.66 0.836148
Target:  5'- cCUGCCUGCaGGccuucgcCGAGCgCGGgccGCCCu -3'
miRNA:   3'- -GAUGGACGcCCa------GUUCG-GCCac-CGGG- -5'
14360 5' -59.9 NC_003521.1 + 204125 0.66 0.828282
Target:  5'- -cACCUGCucGGGcCAGgcGCCGGa-GCCCg -3'
miRNA:   3'- gaUGGACG--CCCaGUU--CGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 45729 0.66 0.828282
Target:  5'- uCUGCgggacGCGGGUCAGGCCGGguuuuguaGCgCg -3'
miRNA:   3'- -GAUGga---CGCCCAGUUCGGCCac------CGgG- -5'
14360 5' -59.9 NC_003521.1 + 207830 0.66 0.828282
Target:  5'- -aGCCUGCGGGgcuUCAuccGCCaG-GGCUCc -3'
miRNA:   3'- gaUGGACGCCC---AGUu--CGGcCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 138393 0.66 0.828282
Target:  5'- -gGCCUGCGGcgcGUCuggaucGCCGuGUGGaCCa -3'
miRNA:   3'- gaUGGACGCC---CAGuu----CGGC-CACCgGG- -5'
14360 5' -59.9 NC_003521.1 + 6707 0.67 0.820258
Target:  5'- -aGCgCUGCuGGGUCucGCCGuGgugcagGGCCUg -3'
miRNA:   3'- gaUG-GACG-CCCAGuuCGGC-Ca-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 82746 0.67 0.820258
Target:  5'- -cGCUUGCGGGaCGAGaucacgcgcgaCCGGcgGGCCg -3'
miRNA:   3'- gaUGGACGCCCaGUUC-----------GGCCa-CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.