Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14371 | 3' | -57.1 | NC_003521.1 | + | 17766 | 0.66 | 0.938575 |
Target: 5'- --gGCcG-UACCGCCGGCGgcGGAc- -3' miRNA: 3'- guaCGaCgAUGGCGGCCGCaaCCUcu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 92266 | 0.66 | 0.938575 |
Target: 5'- gGUGCcGCUGCCGCuacCGGCc--GGAGc -3' miRNA: 3'- gUACGaCGAUGGCG---GCCGcaaCCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 140556 | 0.66 | 0.938575 |
Target: 5'- --gGCUGCUGCgG-CGGCGgcGGcGAc -3' miRNA: 3'- guaCGACGAUGgCgGCCGCaaCCuCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 59652 | 0.66 | 0.933838 |
Target: 5'- gGUGCgGCagaCGCUGGCGcgccUGGAGGa -3' miRNA: 3'- gUACGaCGaugGCGGCCGCa---ACCUCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 115618 | 0.66 | 0.933838 |
Target: 5'- --cGUUGCcGCCGCCaccauGGCGgccaUGGAGu -3' miRNA: 3'- guaCGACGaUGGCGG-----CCGCa---ACCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 76429 | 0.66 | 0.933838 |
Target: 5'- gGUGCUgGCgACCGuuGuCGUUGGGGu -3' miRNA: 3'- gUACGA-CGaUGGCggCcGCAACCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 2319 | 0.66 | 0.933838 |
Target: 5'- ---cCUGCUGCgCGCCGGCcuccUGGGGc -3' miRNA: 3'- guacGACGAUG-GCGGCCGca--ACCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 135234 | 0.66 | 0.933838 |
Target: 5'- --aGCgGCUG-CGCCGGCGgcGGcGAc -3' miRNA: 3'- guaCGaCGAUgGCGGCCGCaaCCuCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 77025 | 0.66 | 0.933838 |
Target: 5'- gCAUGCgGUUGagGCCGGCGgUGGuGGc -3' miRNA: 3'- -GUACGaCGAUggCGGCCGCaACCuCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 202547 | 0.66 | 0.933838 |
Target: 5'- ---cCUGCUGCgCGCCGGCcuccUGGGGc -3' miRNA: 3'- guacGACGAUG-GCGGCCGca--ACCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 102367 | 0.66 | 0.933838 |
Target: 5'- gAUGUgGC-GCCGCCGGCGaugcacgcgcGGGGAc -3' miRNA: 3'- gUACGaCGaUGGCGGCCGCaa--------CCUCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 214478 | 0.66 | 0.932864 |
Target: 5'- gCGUGCUGg-ACCGCUGGaagccuccccUGGAGAg -3' miRNA: 3'- -GUACGACgaUGGCGGCCgca-------ACCUCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 138021 | 0.66 | 0.928876 |
Target: 5'- gGUGCgcgUGCgucGCUGCCGGCGcacGGGGc -3' miRNA: 3'- gUACG---ACGa--UGGCGGCCGCaa-CCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 168972 | 0.66 | 0.928876 |
Target: 5'- --cGCUGCUGUCGCCGacgcGCGUcggucgcgGGAGGc -3' miRNA: 3'- guaCGACGAUGGCGGC----CGCAa-------CCUCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 43121 | 0.66 | 0.928876 |
Target: 5'- --cGCUGCggcgAgCGCuCGGCGcugggcgUGGAGGu -3' miRNA: 3'- guaCGACGa---UgGCG-GCCGCa------ACCUCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 42842 | 0.66 | 0.928876 |
Target: 5'- gUAUGCUaccccgGgaACUGCCGGCGUcGGAc- -3' miRNA: 3'- -GUACGA------CgaUGGCGGCCGCAaCCUcu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 74891 | 0.66 | 0.92369 |
Target: 5'- --cGCUGCUGCgCGagaCGGUGgcggcggUGGAGu -3' miRNA: 3'- guaCGACGAUG-GCg--GCCGCa------ACCUCu -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 87712 | 0.66 | 0.92369 |
Target: 5'- --cGcCUGCUGCCGucgcgcgcgcCCGGCGgcgUGGuGGg -3' miRNA: 3'- guaC-GACGAUGGC----------GGCCGCa--ACCuCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 33041 | 0.66 | 0.92369 |
Target: 5'- --aGCUGUaGCCGUCGucCGggGGAGAg -3' miRNA: 3'- guaCGACGaUGGCGGCc-GCaaCCUCU- -5' |
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14371 | 3' | -57.1 | NC_003521.1 | + | 37109 | 0.66 | 0.92369 |
Target: 5'- cCcgGCUGCUGCUGCCGuCGcuacUGGcGGAc -3' miRNA: 3'- -GuaCGACGAUGGCGGCcGCa---ACC-UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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