miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 214505 0.67 0.684126
Target:  5'- aGGG-CGUugCugGgaugcuuguagUCGgUGCCCUCCa -3'
miRNA:   3'- gCCCaGCGugGugC-----------GGCgACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 213310 0.66 0.765748
Target:  5'- uGGG-CGCcUCGgGCCGCacGCCCcCCg -3'
miRNA:   3'- gCCCaGCGuGGUgCGGCGa-CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 213077 0.69 0.59012
Target:  5'- uCGGGaCGaCAUCGCGgCGCUcGUUCUCCu -3'
miRNA:   3'- -GCCCaGC-GUGGUGCgGCGA-CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 212710 0.66 0.745457
Target:  5'- uGGGUCGgGCCucgaucuugggcgaGCGCCuGCUcGgCUUCCc -3'
miRNA:   3'- gCCCAGCgUGG--------------UGCGG-CGA-CgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 212523 0.73 0.338637
Target:  5'- gGGGUCGC----UGCCGCUGCUCUCg -3'
miRNA:   3'- gCCCAGCGugguGCGGCGACGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 212155 0.66 0.739188
Target:  5'- aGGGcCGUguccauguGCCGCGCC-UUGCCCagggCCu -3'
miRNA:   3'- gCCCaGCG--------UGGUGCGGcGACGGGa---GG- -5'
14387 3' -62.8 NC_003521.1 + 209515 0.67 0.674781
Target:  5'- gGGGUCacgGUgACCGuCGCCGCUGCCg--- -3'
miRNA:   3'- gCCCAG---CG-UGGU-GCGGCGACGGgagg -5'
14387 3' -62.8 NC_003521.1 + 208958 0.75 0.292173
Target:  5'- gCGGuaccgcUCGCACCGCGCCGCcGUCUUCUu -3'
miRNA:   3'- -GCCc-----AGCGUGGUGCGGCGaCGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 208693 0.66 0.739188
Target:  5'- -uGGU-GCACCGCGCCcgcuacCUGCCCgagaucagCCg -3'
miRNA:   3'- gcCCAgCGUGGUGCGGc-----GACGGGa-------GG- -5'
14387 3' -62.8 NC_003521.1 + 207167 0.66 0.739188
Target:  5'- -cGGUCGCuggaucCCGCuCUGCUGgccgcCCCUCCa -3'
miRNA:   3'- gcCCAGCGu-----GGUGcGGCGAC-----GGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 206402 0.71 0.43837
Target:  5'- uGGaGUCGCACCgcgACGCCcaGCUGaUCCUCa -3'
miRNA:   3'- gCC-CAGCGUGG---UGCGG--CGAC-GGGAGg -5'
14387 3' -62.8 NC_003521.1 + 206319 0.67 0.702701
Target:  5'- cCGcGGcCGCuACCuGCGCuCGCUGCUCUgCu -3'
miRNA:   3'- -GC-CCaGCG-UGG-UGCG-GCGACGGGAgG- -5'
14387 3' -62.8 NC_003521.1 + 205901 0.73 0.338637
Target:  5'- aGGGUCuGCGCCGCuacCUGCUGCgCUUCg -3'
miRNA:   3'- gCCCAG-CGUGGUGc--GGCGACGgGAGG- -5'
14387 3' -62.8 NC_003521.1 + 205018 0.67 0.674781
Target:  5'- aGGuucUCGC-CCACGCCGCcguagucgGCCUUCg -3'
miRNA:   3'- gCCc--AGCGuGGUGCGGCGa-------CGGGAGg -5'
14387 3' -62.8 NC_003521.1 + 204090 0.71 0.446718
Target:  5'- uGGGccacgUGCACCuggugGCGCCaCUGCgCCUCCa -3'
miRNA:   3'- gCCCa----GCGUGG-----UGCGGcGACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 202582 0.66 0.73649
Target:  5'- uGGGcCGCgucucgccccgcccGCCGagGCCGCccUGCgCCUCCu -3'
miRNA:   3'- gCCCaGCG--------------UGGUg-CGGCG--ACG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 202246 0.68 0.627742
Target:  5'- aCGGcGUCGCGCCccacaacuCGuCCGCUGCUa-CCu -3'
miRNA:   3'- -GCC-CAGCGUGGu-------GC-GGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 201584 0.66 0.74813
Target:  5'- uGGGgcugaaCGC-CCGCGggccaCCGCUGUCC-CCg -3'
miRNA:   3'- gCCCa-----GCGuGGUGC-----GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 200589 0.66 0.756986
Target:  5'- -cGGagGCgGCCcuGCGaCCGCUGCCCgCCu -3'
miRNA:   3'- gcCCagCG-UGG--UGC-GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 197944 0.66 0.74813
Target:  5'- aCGGGcgCGCGCUugaGCUGCgcgaUGCCCUg- -3'
miRNA:   3'- -GCCCa-GCGUGGug-CGGCG----ACGGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.