miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14399 5' -57.9 NC_003521.1 + 148685 0.65 0.929182
Target:  5'- aAGGAGccgggaagccccccGCCCGAacCGCACCCgggGGuucCGAc -3'
miRNA:   3'- gUCCUC--------------UGGGUU--GCGUGGGa--CCu--GCU- -5'
14399 5' -57.9 NC_003521.1 + 125230 0.66 0.925636
Target:  5'- gCGGGAGAaaaagaaaCGACGCGCacggGGGCGAg -3'
miRNA:   3'- -GUCCUCUgg------GUUGCGUGgga-CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 140619 0.66 0.925636
Target:  5'- gAGGAGGCCguaaaUAugGCGCUCgUGGccuGCGAa -3'
miRNA:   3'- gUCCUCUGG-----GUugCGUGGG-ACC---UGCU- -5'
14399 5' -57.9 NC_003521.1 + 59190 0.66 0.925636
Target:  5'- uCAGGAGACguuaaauauCCugaguCGCguggagaucgggGCCCUGGACGc -3'
miRNA:   3'- -GUCCUCUG---------GGuu---GCG------------UGGGACCUGCu -5'
14399 5' -57.9 NC_003521.1 + 109258 0.66 0.925636
Target:  5'- uCAGGcucuGGCCC-AC-CACCgUGGugGAg -3'
miRNA:   3'- -GUCCu---CUGGGuUGcGUGGgACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 118680 0.66 0.925636
Target:  5'- uCGGGAGGC--GGCgGUACCgCUGGugGAg -3'
miRNA:   3'- -GUCCUCUGggUUG-CGUGG-GACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 168101 0.66 0.925121
Target:  5'- -cGGAuGCCCuccaacACGCGCCCgggguccUGGugGAa -3'
miRNA:   3'- guCCUcUGGGu-----UGCGUGGG-------ACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 113343 0.66 0.925121
Target:  5'- cCGGGGGGCUUccaggggGACGgGCCggGGGCGAg -3'
miRNA:   3'- -GUCCUCUGGG-------UUGCgUGGgaCCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 213482 0.66 0.922511
Target:  5'- cCAGGAG-CCCGAgGUggacgaggaguucaaGCCCgaGGACGu -3'
miRNA:   3'- -GUCCUCuGGGUUgCG---------------UGGGa-CCUGCu -5'
14399 5' -57.9 NC_003521.1 + 190777 0.66 0.920384
Target:  5'- uCGGGAGGCCUacGACGCccucaaaaagGCCCUGcuGCGc -3'
miRNA:   3'- -GUCCUCUGGG--UUGCG----------UGGGACc-UGCu -5'
14399 5' -57.9 NC_003521.1 + 8634 0.66 0.920384
Target:  5'- -cGGGGGCCCAugGCGugggaGGACGGu -3'
miRNA:   3'- guCCUCUGGGUugCGUggga-CCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 193239 0.66 0.920384
Target:  5'- gCGGGAGcGCCUGGgGUACCCcGGAUa- -3'
miRNA:   3'- -GUCCUC-UGGGUUgCGUGGGaCCUGcu -5'
14399 5' -57.9 NC_003521.1 + 153393 0.66 0.920384
Target:  5'- uGGGGGGCUggaugggaaaggCGACGaucCCCUGGGCGu -3'
miRNA:   3'- gUCCUCUGG------------GUUGCgu-GGGACCUGCu -5'
14399 5' -57.9 NC_003521.1 + 188108 0.66 0.920384
Target:  5'- --uGGGACCCGACGgaggaCACaCUGGugGAg -3'
miRNA:   3'- gucCUCUGGGUUGC-----GUGgGACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 104459 0.66 0.920384
Target:  5'- gUAGGaAGuCgCAGCGCauccucgagGCCCUGGACa- -3'
miRNA:   3'- -GUCC-UCuGgGUUGCG---------UGGGACCUGcu -5'
14399 5' -57.9 NC_003521.1 + 28124 0.66 0.920384
Target:  5'- --cGAGGCCCGACccaccaGCcuuGCCCUGG-CGAc -3'
miRNA:   3'- gucCUCUGGGUUG------CG---UGGGACCuGCU- -5'
14399 5' -57.9 NC_003521.1 + 145808 0.66 0.920384
Target:  5'- gAGGuGAUcgucuUCGACGCcaaACaCCUGGACGAc -3'
miRNA:   3'- gUCCuCUG-----GGUUGCG---UG-GGACCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 39314 0.66 0.917128
Target:  5'- cCAGGcAGcAUCgCGACGCaaucgauuaucgcugGCCCUGGugGGu -3'
miRNA:   3'- -GUCC-UC-UGG-GUUGCG---------------UGGGACCugCU- -5'
14399 5' -57.9 NC_003521.1 + 106046 0.66 0.914913
Target:  5'- gGGGaAGACgCCGAUGuCGCCCUcGAUGGu -3'
miRNA:   3'- gUCC-UCUG-GGUUGC-GUGGGAcCUGCU- -5'
14399 5' -57.9 NC_003521.1 + 25856 0.66 0.914354
Target:  5'- -cGGAGACgCGaaccACGCugugaucGCCCaGGACGAu -3'
miRNA:   3'- guCCUCUGgGU----UGCG-------UGGGaCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.