miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 5' -59.1 NC_003521.1 + 43802 0.66 0.891686
Target:  5'- aGGGGGGCcgccaugucgcagcaGCCGGGUCa-GCCgcCGCCGg -3'
miRNA:   3'- gCUCCUCG---------------UGGUCUAGgaCGG--GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 63085 0.66 0.889124
Target:  5'- -cAGcuGCGCCGGcgCgCUGCCCGCCc -3'
miRNA:   3'- gcUCcuCGUGGUCuaG-GACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 88330 0.66 0.889124
Target:  5'- cCGAGGccuaucuGCACCucuccuucggggAGAUCgUGgCCGCCGc -3'
miRNA:   3'- -GCUCCu------CGUGG------------UCUAGgACgGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 181742 0.66 0.889124
Target:  5'- aCGAGGAGCguaccgcagaucACCAGGgagaagGCCCACa- -3'
miRNA:   3'- -GCUCCUCG------------UGGUCUagga--CGGGUGgc -5'
14421 5' -59.1 NC_003521.1 + 165751 0.66 0.889124
Target:  5'- gGAGG-GCGgCGGcggCUUGCCCAUCa -3'
miRNA:   3'- gCUCCuCGUgGUCua-GGACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 27903 0.66 0.888479
Target:  5'- aGAGGAaggggagaagaccGCGCC--GUCCUcgaGUCCACCGa -3'
miRNA:   3'- gCUCCU-------------CGUGGucUAGGA---CGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 27364 0.66 0.882578
Target:  5'- --uGGAGCACCAGGcUCCaGCCgggggGCCa -3'
miRNA:   3'- gcuCCUCGUGGUCU-AGGaCGGg----UGGc -5'
14421 5' -59.1 NC_003521.1 + 166178 0.66 0.882578
Target:  5'- cCGAGcGGCGCUccaGGGUCCcGCgCACCa -3'
miRNA:   3'- -GCUCcUCGUGG---UCUAGGaCGgGUGGc -5'
14421 5' -59.1 NC_003521.1 + 217233 0.66 0.882578
Target:  5'- aGAGGAuGCagGCCAGcacccCCgcGCCCACCa -3'
miRNA:   3'- gCUCCU-CG--UGGUCua---GGa-CGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 120190 0.66 0.882578
Target:  5'- gGAGG-GCGUguGGgugcCCUGCCCGCUGc -3'
miRNA:   3'- gCUCCuCGUGguCUa---GGACGGGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 148727 0.66 0.882578
Target:  5'- cCGAcccGGGGCACCGc--CCUGCgCACCc -3'
miRNA:   3'- -GCU---CCUCGUGGUcuaGGACGgGUGGc -5'
14421 5' -59.1 NC_003521.1 + 72031 0.66 0.881913
Target:  5'- gCGuGGccuGCACCAGGUCCuggugcagacccuUGCUCAUCu -3'
miRNA:   3'- -GCuCCu--CGUGGUCUAGG-------------ACGGGUGGc -5'
14421 5' -59.1 NC_003521.1 + 207338 0.66 0.875832
Target:  5'- uCGGGGGGCGCgucccuCGGGUCggcgcgGCCgGCCGa -3'
miRNA:   3'- -GCUCCUCGUG------GUCUAGga----CGGgUGGC- -5'
14421 5' -59.1 NC_003521.1 + 218110 0.66 0.875832
Target:  5'- uGAGGGcguagagcccGCugUAGAUCUUGCUgACCc -3'
miRNA:   3'- gCUCCU----------CGugGUCUAGGACGGgUGGc -5'
14421 5' -59.1 NC_003521.1 + 186817 0.66 0.875832
Target:  5'- gCGuGG-GCgACCAGAUCUgacgGUCCugCGa -3'
miRNA:   3'- -GCuCCuCG-UGGUCUAGGa---CGGGugGC- -5'
14421 5' -59.1 NC_003521.1 + 148905 0.66 0.875832
Target:  5'- cCGAGGAGCGCCgccgcGGcAUCgaGCaCCGCa- -3'
miRNA:   3'- -GCUCCUCGUGG-----UC-UAGgaCG-GGUGgc -5'
14421 5' -59.1 NC_003521.1 + 167677 0.66 0.875832
Target:  5'- cCGAGGcGGCGCCGccgCCgcUGCCCccGCCGu -3'
miRNA:   3'- -GCUCC-UCGUGGUcuaGG--ACGGG--UGGC- -5'
14421 5' -59.1 NC_003521.1 + 163086 0.66 0.873769
Target:  5'- cCGAGGccggcccguccucgGGCGCCAGcgCCacgaCCACCGc -3'
miRNA:   3'- -GCUCC--------------UCGUGGUCuaGGacg-GGUGGC- -5'
14421 5' -59.1 NC_003521.1 + 229625 0.66 0.873078
Target:  5'- uGAGGcGCGacggcucugaagaCAGGUgCUGCCuCACCGg -3'
miRNA:   3'- gCUCCuCGUg------------GUCUAgGACGG-GUGGC- -5'
14421 5' -59.1 NC_003521.1 + 56462 0.66 0.868889
Target:  5'- cCGAGaGGCGCC-GcgCCacgGCCCGCCc -3'
miRNA:   3'- -GCUCcUCGUGGuCuaGGa--CGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.