Results 1 - 20 of 178 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 124208 | 0.66 | 0.883797 |
Target: 5'- aGCGGGCCcuuucuGG-CCcGCGACcGGGCc -3' miRNA: 3'- aCGCCCGGu-----UCaGGuCGUUGcUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 64746 | 0.66 | 0.883797 |
Target: 5'- cGcCGuGGCCAAGacgCCGGCcGGCGcGGCa -3' miRNA: 3'- aC-GC-CCGGUUCa--GGUCG-UUGCuCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 150793 | 0.66 | 0.883797 |
Target: 5'- gGCGGGCgCGAG-CC-GCcAgGGGGCg -3' miRNA: 3'- aCGCCCG-GUUCaGGuCGuUgCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 211320 | 0.66 | 0.883797 |
Target: 5'- cGCGGGUCAacaggcGGUCCcGCGggcGCGAguGGUUg -3' miRNA: 3'- aCGCCCGGU------UCAGGuCGU---UGCU--CCGA- -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 223318 | 0.66 | 0.883797 |
Target: 5'- cGcCGGGCCGGGaaccgccgugaCCGGCGGCGccGCUa -3' miRNA: 3'- aC-GCCCGGUUCa----------GGUCGUUGCucCGA- -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 152836 | 0.66 | 0.883797 |
Target: 5'- cGCGcGCCcccagauucaccGAGUCCucGCGccGCGAGGCg -3' miRNA: 3'- aCGCcCGG------------UUCAGGu-CGU--UGCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 49854 | 0.66 | 0.883797 |
Target: 5'- cGCucGGCCucGUCCAGCAugcucAUGAuGGCg -3' miRNA: 3'- aCGc-CCGGuuCAGGUCGU-----UGCU-CCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 155450 | 0.66 | 0.883797 |
Target: 5'- cGCuGGgCGAGUCgCAGCAGCccgucGAGGUc -3' miRNA: 3'- aCGcCCgGUUCAG-GUCGUUG-----CUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 6534 | 0.66 | 0.883125 |
Target: 5'- gGCGGuCUgcGUCCcgccccagggcagGGCGACGAGGUg -3' miRNA: 3'- aCGCCcGGuuCAGG-------------UCGUUGCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 130084 | 0.66 | 0.883125 |
Target: 5'- cGCuGGCCGAGUggaacugCCAGCuGCcGGGCc -3' miRNA: 3'- aCGcCCGGUUCA-------GGUCGuUGcUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 56248 | 0.66 | 0.876982 |
Target: 5'- aUGUcgGGGCUGAGgcaggCCGGCAGgcaGAGGUUg -3' miRNA: 3'- -ACG--CCCGGUUCa----GGUCGUUg--CUCCGA- -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 97557 | 0.66 | 0.876982 |
Target: 5'- cGCGGGUCGcaGGUCaGGCcgcggAugGAGGUg -3' miRNA: 3'- aCGCCCGGU--UCAGgUCG-----UugCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 148370 | 0.66 | 0.876982 |
Target: 5'- aGCGGG-CAAG-CCGagcgggguGCGGgGAGGCUg -3' miRNA: 3'- aCGCCCgGUUCaGGU--------CGUUgCUCCGA- -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 208610 | 0.66 | 0.869963 |
Target: 5'- uUGCGGcgGCCAuagccAGUCaccGCggUGAGGCa -3' miRNA: 3'- -ACGCC--CGGU-----UCAGgu-CGuuGCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 38309 | 0.66 | 0.869963 |
Target: 5'- uUGCaGGCCGAGgcaCGGCcaagGGCGAuGGCg -3' miRNA: 3'- -ACGcCCGGUUCag-GUCG----UUGCU-CCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 178137 | 0.66 | 0.869963 |
Target: 5'- gGCGGGUCccgaagauAGGUCCAGCAuguagagaaaGAGgGCg -3' miRNA: 3'- aCGCCCGG--------UUCAGGUCGUug--------CUC-CGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 113170 | 0.66 | 0.869963 |
Target: 5'- cGC-GGCCAAGaUgGGCcGCGAGGUg -3' miRNA: 3'- aCGcCCGGUUCaGgUCGuUGCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 204686 | 0.66 | 0.869963 |
Target: 5'- -uCGGGCaGGGUCgacgagGGCAGCGAGGUg -3' miRNA: 3'- acGCCCGgUUCAGg-----UCGUUGCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 46258 | 0.66 | 0.869963 |
Target: 5'- aGCGGcCCAAG-CUAuuuCGACGAGGCg -3' miRNA: 3'- aCGCCcGGUUCaGGUc--GUUGCUCCGa -5' |
|||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 193225 | 0.66 | 0.86925 |
Target: 5'- gGC-GGCCAAGUCgGGCGGgagcgccUGGGGUa -3' miRNA: 3'- aCGcCCGGUUCAGgUCGUU-------GCUCCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home