miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 5' -58.7 NC_003521.1 + 185579 0.71 0.627825
Target:  5'- cGCGGGCUcg--CCGGCGAgccgcuCGGGGCUg -3'
miRNA:   3'- aCGCCCGGuucaGGUCGUU------GCUCCGA- -5'
14437 5' -58.7 NC_003521.1 + 195357 0.71 0.617956
Target:  5'- gGUGGGCCGGGUgaaggugacgcCCGagGACGAGGCg -3'
miRNA:   3'- aCGCCCGGUUCA-----------GGUcgUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 236465 0.73 0.502067
Target:  5'- cGCGGGCCGcgaugAGcgaaccgCCGGCGGCGGuGGCg -3'
miRNA:   3'- aCGCCCGGU-----UCa------GGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 6478 0.77 0.320479
Target:  5'- -aCGGGaggCAGGUCCGGCAGCGgAGGCg -3'
miRNA:   3'- acGCCCg--GUUCAGGUCGUUGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 181737 0.69 0.70627
Target:  5'- cGCuGGCCAAGcggccgcgcgaUCCGGcCGACGAGGaCa -3'
miRNA:   3'- aCGcCCGGUUC-----------AGGUC-GUUGCUCC-Ga -5'
14437 5' -58.7 NC_003521.1 + 66880 0.7 0.657423
Target:  5'- cUGU-GGCCGAGaCCAGUGACGAGGa- -3'
miRNA:   3'- -ACGcCCGGUUCaGGUCGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 17162 0.71 0.608096
Target:  5'- cGCGaGGCCGAGgcgcagcgCUGGCAGCuGGGCa -3'
miRNA:   3'- aCGC-CCGGUUCa-------GGUCGUUGcUCCGa -5'
14437 5' -58.7 NC_003521.1 + 46411 0.78 0.261742
Target:  5'- cGCGGGCCAGGaagCGGCGACG-GGCg -3'
miRNA:   3'- aCGCCCGGUUCag-GUCGUUGCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 175804 0.7 0.647566
Target:  5'- cGCGGGCCAGGaugcgCguGCua-GGGGCg -3'
miRNA:   3'- aCGCCCGGUUCa----GguCGuugCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 98589 0.8 0.192721
Target:  5'- aGCGGGCCcgcGAG-CgCAGCGACGAGGCc -3'
miRNA:   3'- aCGCCCGG---UUCaG-GUCGUUGCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 95727 0.71 0.617956
Target:  5'- --aGGcGCCAGGUCCAGCAG-GcGGCUg -3'
miRNA:   3'- acgCC-CGGUUCAGGUCGUUgCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 219704 0.7 0.637698
Target:  5'- gGCGGGUCG---UCGGCAGCGgAGGCa -3'
miRNA:   3'- aCGCCCGGUucaGGUCGUUGC-UCCGa -5'
14437 5' -58.7 NC_003521.1 + 113849 0.72 0.56889
Target:  5'- aGCGGGgCGg--CCGGCGACGAcGGCg -3'
miRNA:   3'- aCGCCCgGUucaGGUCGUUGCU-CCGa -5'
14437 5' -58.7 NC_003521.1 + 119966 0.72 0.530342
Target:  5'- cGCGgccgccucaaGGCCGAGUCCAGCAuggcaccCGAGGa- -3'
miRNA:   3'- aCGC----------CCGGUUCAGGUCGUu------GCUCCga -5'
14437 5' -58.7 NC_003521.1 + 40753 0.73 0.483588
Target:  5'- gGCGaGGCCAAG-CCGGCGGuaagccagccggUGAGGCa -3'
miRNA:   3'- aCGC-CCGGUUCaGGUCGUU------------GCUCCGa -5'
14437 5' -58.7 NC_003521.1 + 155506 0.76 0.357155
Target:  5'- cGCGGGCCAAGgcuggagcgaCGGCGACGuGGUUc -3'
miRNA:   3'- aCGCCCGGUUCag--------GUCGUUGCuCCGA- -5'
14437 5' -58.7 NC_003521.1 + 215436 0.68 0.740594
Target:  5'- cGCGGGUCugggagcaggguGUCCGGCGcCGAGGa- -3'
miRNA:   3'- aCGCCCGGuu----------CAGGUCGUuGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 125411 0.69 0.70627
Target:  5'- cGCGGcGCUGAGUCCGGaggcCGuGGCg -3'
miRNA:   3'- aCGCC-CGGUUCAGGUCguu-GCuCCGa -5'
14437 5' -58.7 NC_003521.1 + 18978 0.69 0.70627
Target:  5'- aGgGGGUCGAGgacgcgCCGcGCGACGAGGg- -3'
miRNA:   3'- aCgCCCGGUUCa-----GGU-CGUUGCUCCga -5'
14437 5' -58.7 NC_003521.1 + 13084 0.7 0.68685
Target:  5'- aGCGGaCCAAGUCCgaggggggaAGCGGCacaGAGGCc -3'
miRNA:   3'- aCGCCcGGUUCAGG---------UCGUUG---CUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.