miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 3' -62 NC_003521.1 + 130119 0.66 0.810823
Target:  5'- uUCUGCCCcugcGUCGUCG-GCG-GCGC-CGc -3'
miRNA:   3'- -GGGCGGG----CAGCAGCgCGCuCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 84738 0.66 0.810823
Target:  5'- aCUGCCguCGUCGUCuuGCuCGGGCGCGg- -3'
miRNA:   3'- gGGCGG--GCAGCAG--CGcGCUCGCGUgu -5'
14446 3' -62 NC_003521.1 + 171098 0.66 0.810823
Target:  5'- cCCCGCCCGcCGUuacCGCGUaccucaGGGC-CGCc -3'
miRNA:   3'- -GGGCGGGCaGCA---GCGCG------CUCGcGUGu -5'
14446 3' -62 NC_003521.1 + 87787 0.66 0.810823
Target:  5'- gCCGCCuCGUCGgucUCGgGCGgccugggccaggAGCGgACAu -3'
miRNA:   3'- gGGCGG-GCAGC---AGCgCGC------------UCGCgUGU- -5'
14446 3' -62 NC_003521.1 + 56127 0.66 0.810823
Target:  5'- gCCCaGCaCCa-CGUCGgGCGAGUGCGg- -3'
miRNA:   3'- -GGG-CG-GGcaGCAGCgCGCUCGCGUgu -5'
14446 3' -62 NC_003521.1 + 106388 0.66 0.810823
Target:  5'- gCCGCcuccuCCGUCGUCGgGUG-GCGUg-- -3'
miRNA:   3'- gGGCG-----GGCAGCAGCgCGCuCGCGugu -5'
14446 3' -62 NC_003521.1 + 149524 0.66 0.810823
Target:  5'- aCCCGaCCUcuucgaGUCGgGCG-GCGCGCGc -3'
miRNA:   3'- -GGGC-GGGcag---CAGCgCGCuCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 6676 0.66 0.810016
Target:  5'- uCCCGCUCGUgcugcagggccugCGcC-CGCGAGCGCuGCu -3'
miRNA:   3'- -GGGCGGGCA-------------GCaGcGCGCUCGCG-UGu -5'
14446 3' -62 NC_003521.1 + 23568 0.66 0.809208
Target:  5'- cCUCGUCCGUCaugguggugggCGCGgGGGUGCugGc -3'
miRNA:   3'- -GGGCGGGCAGca---------GCGCgCUCGCGugU- -5'
14446 3' -62 NC_003521.1 + 153384 0.66 0.805961
Target:  5'- --aGCCCGUCGuagcgcaggaucuccUCGUGCaGGUGCGCc -3'
miRNA:   3'- gggCGGGCAGC---------------AGCGCGcUCGCGUGu -5'
14446 3' -62 NC_003521.1 + 118909 0.66 0.802694
Target:  5'- cCUCGCCC-UCGUCgGCGCcgcGGCGUggGCGg -3'
miRNA:   3'- -GGGCGGGcAGCAG-CGCGc--UCGCG--UGU- -5'
14446 3' -62 NC_003521.1 + 91308 0.66 0.802694
Target:  5'- -aCGCgCGUaugCGUgugCGCGCGGGgGCACGc -3'
miRNA:   3'- ggGCGgGCA---GCA---GCGCGCUCgCGUGU- -5'
14446 3' -62 NC_003521.1 + 44171 0.66 0.802694
Target:  5'- gCUgGCgCCGUCGguacucCGCGaGAGCGCAgAg -3'
miRNA:   3'- -GGgCG-GGCAGCa-----GCGCgCUCGCGUgU- -5'
14446 3' -62 NC_003521.1 + 77053 0.66 0.801874
Target:  5'- gCCGCuaCCGUUGUUGCcgccgccGUGAGCGC-CGc -3'
miRNA:   3'- gGGCG--GGCAGCAGCG-------CGCUCGCGuGU- -5'
14446 3' -62 NC_003521.1 + 95792 0.66 0.795266
Target:  5'- gCCGCUCGgccacgcgaccagcgCGUCG-GCGAugucgGCGCGCGa -3'
miRNA:   3'- gGGCGGGCa--------------GCAGCgCGCU-----CGCGUGU- -5'
14446 3' -62 NC_003521.1 + 139640 0.66 0.794434
Target:  5'- aUCCGCCCGcCGg-GCGCGGaCGC-CGu -3'
miRNA:   3'- -GGGCGGGCaGCagCGCGCUcGCGuGU- -5'
14446 3' -62 NC_003521.1 + 144938 0.66 0.794434
Target:  5'- gUCGCgCGUCGcCGCGCuGGCuCGCGa -3'
miRNA:   3'- gGGCGgGCAGCaGCGCGcUCGcGUGU- -5'
14446 3' -62 NC_003521.1 + 153238 0.66 0.794434
Target:  5'- aCgGCCU-UCGUC-CGCGuGCGCACc -3'
miRNA:   3'- gGgCGGGcAGCAGcGCGCuCGCGUGu -5'
14446 3' -62 NC_003521.1 + 88842 0.66 0.794434
Target:  5'- gCCG-CCGUCGUagcacaGCaCGGGCGUGCGa -3'
miRNA:   3'- gGGCgGGCAGCAg-----CGcGCUCGCGUGU- -5'
14446 3' -62 NC_003521.1 + 90179 0.66 0.791095
Target:  5'- gCCGCCU-UCGUCGCGCacgcccccgccuGCGCAgCAg -3'
miRNA:   3'- gGGCGGGcAGCAGCGCGcu----------CGCGU-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.