miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14447 3' -54.5 NC_003521.1 + 191021 0.66 0.984413
Target:  5'- gGcgCCCAGCCauuCGGGcggcagcgucUGCUGGccgACGCu -3'
miRNA:   3'- -CuaGGGUCGGg--GCCU----------AUGACUa--UGCG- -5'
14447 3' -54.5 NC_003521.1 + 180768 0.66 0.984413
Target:  5'- uGGUCgCCAGCCauCCGGcgGCUuuugGGUccucGCGCa -3'
miRNA:   3'- -CUAG-GGUCGG--GGCCuaUGA----CUA----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 29417 0.66 0.984413
Target:  5'- aGUCCgGGCCCCGGugacaGCUacaaccaGCGCg -3'
miRNA:   3'- cUAGGgUCGGGGCCua---UGAcua----UGCG- -5'
14447 3' -54.5 NC_003521.1 + 99215 0.66 0.983324
Target:  5'- --gCgCAGUCCUGGAUgacgauagggcuguaGCUGAcggUGCGCg -3'
miRNA:   3'- cuaGgGUCGGGGCCUA---------------UGACU---AUGCG- -5'
14447 3' -54.5 NC_003521.1 + 160668 0.66 0.982567
Target:  5'- -cUCCUGGCCCuCaGcgGCUGG-ACGCg -3'
miRNA:   3'- cuAGGGUCGGG-GcCuaUGACUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 227114 0.66 0.982567
Target:  5'- -uUCCCAGCCCUGGc-GCa---GCGCu -3'
miRNA:   3'- cuAGGGUCGGGGCCuaUGacuaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 90050 0.66 0.980562
Target:  5'- --cUCCAGCUCCGGGacGCcGAcGCGCu -3'
miRNA:   3'- cuaGGGUCGGGGCCUa-UGaCUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 203474 0.66 0.980562
Target:  5'- ---aCCAGUCCCGGcg---GAUACGUg -3'
miRNA:   3'- cuagGGUCGGGGCCuaugaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 11592 0.66 0.980562
Target:  5'- -cUCCgCGGCCCgCGGGUccACUGGcggguauCGCa -3'
miRNA:   3'- cuAGG-GUCGGG-GCCUA--UGACUau-----GCG- -5'
14447 3' -54.5 NC_003521.1 + 175996 0.66 0.980562
Target:  5'- aGAUCCCcuguuAGCCCCGGAcGgUGuu-UGUg -3'
miRNA:   3'- -CUAGGG-----UCGGGGCCUaUgACuauGCG- -5'
14447 3' -54.5 NC_003521.1 + 28461 0.66 0.979279
Target:  5'- --aUCCAGCCUugggcggugcaccagCGGGUGgUGAUGgGCg -3'
miRNA:   3'- cuaGGGUCGGG---------------GCCUAUgACUAUgCG- -5'
14447 3' -54.5 NC_003521.1 + 17517 0.66 0.978389
Target:  5'- -uUCCCGG-CCCGGcgGCgcggGAUucagccaguuGCGCg -3'
miRNA:   3'- cuAGGGUCgGGGCCuaUGa---CUA----------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 233416 0.66 0.976042
Target:  5'- -cUCCUGGCCCCGGugGCUccGAcggccucgACGCg -3'
miRNA:   3'- cuAGGGUCGGGGCCuaUGA--CUa-------UGCG- -5'
14447 3' -54.5 NC_003521.1 + 235193 0.66 0.976042
Target:  5'- aAUCCCAcGCCCUGuGGUgcgACUGcgACGa -3'
miRNA:   3'- cUAGGGU-CGGGGC-CUA---UGACuaUGCg -5'
14447 3' -54.5 NC_003521.1 + 2455 0.66 0.976042
Target:  5'- cAUCCCcgcGCCCCGc-UAUgGGUACGCg -3'
miRNA:   3'- cUAGGGu--CGGGGCcuAUGaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 180719 0.66 0.976042
Target:  5'- cGUCaCCAGCCCCGGGUGgaagaaGAgcCGUu -3'
miRNA:   3'- cUAG-GGUCGGGGCCUAUga----CUauGCG- -5'
14447 3' -54.5 NC_003521.1 + 234471 0.66 0.976042
Target:  5'- ---aCCGGCCCCucugggauccGGAU-CUGGcGCGCg -3'
miRNA:   3'- cuagGGUCGGGG----------CCUAuGACUaUGCG- -5'
14447 3' -54.5 NC_003521.1 + 63542 0.66 0.975797
Target:  5'- uGggCCCAgcgucacggagccGCCCUcgucaccuggguGGAUgaGCUGAUGCGCc -3'
miRNA:   3'- -CuaGGGU-------------CGGGG------------CCUA--UGACUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 169043 0.66 0.973513
Target:  5'- cGUCCUGGUcgUCCGGGgg--GAUGCGCa -3'
miRNA:   3'- cUAGGGUCG--GGGCCUaugaCUAUGCG- -5'
14447 3' -54.5 NC_003521.1 + 216665 0.66 0.973513
Target:  5'- -uUUCCGaguGCCCCGcGAgUACcccgUGAUACGCg -3'
miRNA:   3'- cuAGGGU---CGGGGC-CU-AUG----ACUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.