Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14447 | 3' | -54.5 | NC_003521.1 | + | 191021 | 0.66 | 0.984413 |
Target: 5'- gGcgCCCAGCCauuCGGGcggcagcgucUGCUGGccgACGCu -3' miRNA: 3'- -CuaGGGUCGGg--GCCU----------AUGACUa--UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 180768 | 0.66 | 0.984413 |
Target: 5'- uGGUCgCCAGCCauCCGGcgGCUuuugGGUccucGCGCa -3' miRNA: 3'- -CUAG-GGUCGG--GGCCuaUGA----CUA----UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 29417 | 0.66 | 0.984413 |
Target: 5'- aGUCCgGGCCCCGGugacaGCUacaaccaGCGCg -3' miRNA: 3'- cUAGGgUCGGGGCCua---UGAcua----UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 99215 | 0.66 | 0.983324 |
Target: 5'- --gCgCAGUCCUGGAUgacgauagggcuguaGCUGAcggUGCGCg -3' miRNA: 3'- cuaGgGUCGGGGCCUA---------------UGACU---AUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 160668 | 0.66 | 0.982567 |
Target: 5'- -cUCCUGGCCCuCaGcgGCUGG-ACGCg -3' miRNA: 3'- cuAGGGUCGGG-GcCuaUGACUaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 227114 | 0.66 | 0.982567 |
Target: 5'- -uUCCCAGCCCUGGc-GCa---GCGCu -3' miRNA: 3'- cuAGGGUCGGGGCCuaUGacuaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 90050 | 0.66 | 0.980562 |
Target: 5'- --cUCCAGCUCCGGGacGCcGAcGCGCu -3' miRNA: 3'- cuaGGGUCGGGGCCUa-UGaCUaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 175996 | 0.66 | 0.980562 |
Target: 5'- aGAUCCCcuguuAGCCCCGGAcGgUGuu-UGUg -3' miRNA: 3'- -CUAGGG-----UCGGGGCCUaUgACuauGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 11592 | 0.66 | 0.980562 |
Target: 5'- -cUCCgCGGCCCgCGGGUccACUGGcggguauCGCa -3' miRNA: 3'- cuAGG-GUCGGG-GCCUA--UGACUau-----GCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 203474 | 0.66 | 0.980562 |
Target: 5'- ---aCCAGUCCCGGcg---GAUACGUg -3' miRNA: 3'- cuagGGUCGGGGCCuaugaCUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 28461 | 0.66 | 0.979279 |
Target: 5'- --aUCCAGCCUugggcggugcaccagCGGGUGgUGAUGgGCg -3' miRNA: 3'- cuaGGGUCGGG---------------GCCUAUgACUAUgCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 17517 | 0.66 | 0.978389 |
Target: 5'- -uUCCCGG-CCCGGcgGCgcggGAUucagccaguuGCGCg -3' miRNA: 3'- cuAGGGUCgGGGCCuaUGa---CUA----------UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 180719 | 0.66 | 0.976042 |
Target: 5'- cGUCaCCAGCCCCGGGUGgaagaaGAgcCGUu -3' miRNA: 3'- cUAG-GGUCGGGGCCUAUga----CUauGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 234471 | 0.66 | 0.976042 |
Target: 5'- ---aCCGGCCCCucugggauccGGAU-CUGGcGCGCg -3' miRNA: 3'- cuagGGUCGGGG----------CCUAuGACUaUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 235193 | 0.66 | 0.976042 |
Target: 5'- aAUCCCAcGCCCUGuGGUgcgACUGcgACGa -3' miRNA: 3'- cUAGGGU-CGGGGC-CUA---UGACuaUGCg -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 233416 | 0.66 | 0.976042 |
Target: 5'- -cUCCUGGCCCCGGugGCUccGAcggccucgACGCg -3' miRNA: 3'- cuAGGGUCGGGGCCuaUGA--CUa-------UGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 2455 | 0.66 | 0.976042 |
Target: 5'- cAUCCCcgcGCCCCGc-UAUgGGUACGCg -3' miRNA: 3'- cUAGGGu--CGGGGCcuAUGaCUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 63542 | 0.66 | 0.975797 |
Target: 5'- uGggCCCAgcgucacggagccGCCCUcgucaccuggguGGAUgaGCUGAUGCGCc -3' miRNA: 3'- -CuaGGGU-------------CGGGG------------CCUA--UGACUAUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 206310 | 0.66 | 0.973513 |
Target: 5'- cGUCUCGGCCCgCGGccGCUaccUGCGCu -3' miRNA: 3'- cUAGGGUCGGG-GCCuaUGAcu-AUGCG- -5' |
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14447 | 3' | -54.5 | NC_003521.1 | + | 216665 | 0.66 | 0.973513 |
Target: 5'- -uUUCCGaguGCCCCGcGAgUACcccgUGAUACGCg -3' miRNA: 3'- cuAGGGU---CGGGGC-CU-AUG----ACUAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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