miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 72154 0.83 0.149103
Target:  5'- gCCACCaGgGACCUCCGGcGCCGUCgGCa -3'
miRNA:   3'- -GGUGGgCgCUGGAGGCC-UGGCAGaCG- -5'
14452 3' -60.1 NC_003521.1 + 23070 0.71 0.595997
Target:  5'- uCCACCCGCGucuguggugucuGCgUCCGuGGCCGg--GCg -3'
miRNA:   3'- -GGUGGGCGC------------UGgAGGC-CUGGCagaCG- -5'
14452 3' -60.1 NC_003521.1 + 73985 0.71 0.614891
Target:  5'- aCCGCCUGCGuauCCUCaccgucgucgccUGGAUCGUCgcaGCa -3'
miRNA:   3'- -GGUGGGCGCu--GGAG------------GCCUGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 110875 0.66 0.892671
Target:  5'- gCgGCCCGCGGCagaaCUGcGCCGUCUcgGCc -3'
miRNA:   3'- -GgUGGGCGCUGga--GGCcUGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 1081 0.74 0.434573
Target:  5'- cUCGCCgCGCGACCcCUGGAUCGUgCUGg -3'
miRNA:   3'- -GGUGG-GCGCUGGaGGCCUGGCA-GACg -5'
14452 3' -60.1 NC_003521.1 + 206663 0.74 0.451356
Target:  5'- -gGCCCGCGACCUCaaGGCCuUCgUGCg -3'
miRNA:   3'- ggUGGGCGCUGGAGgcCUGGcAG-ACG- -5'
14452 3' -60.1 NC_003521.1 + 171918 0.74 0.459879
Target:  5'- cUCGCCCcCGACCUCUGuGCCGaUCUGUc -3'
miRNA:   3'- -GGUGGGcGCUGGAGGCcUGGC-AGACG- -5'
14452 3' -60.1 NC_003521.1 + 138026 0.74 0.468487
Target:  5'- gCCGCCCgagcugGCGGCCgCCGGcGCCGUCaucGCg -3'
miRNA:   3'- -GGUGGG------CGCUGGaGGCC-UGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 35614 0.73 0.494791
Target:  5'- uCCGCCUGCcggcccuggacgGGCCUCCGGACCcUCa-- -3'
miRNA:   3'- -GGUGGGCG------------CUGGAGGCCUGGcAGacg -5'
14452 3' -60.1 NC_003521.1 + 182009 0.72 0.577194
Target:  5'- gCCGCCaCGCGcuGCCUgcUCGaGACCGUCUauGCg -3'
miRNA:   3'- -GGUGG-GCGC--UGGA--GGC-CUGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 24792 0.73 0.521747
Target:  5'- uUACCCGCGACUggccCUGGGCC--CUGCg -3'
miRNA:   3'- gGUGGGCGCUGGa---GGCCUGGcaGACG- -5'
14452 3' -60.1 NC_003521.1 + 135035 0.73 0.483307
Target:  5'- -gGCCUGCGucacggugguuaacGCCUCgGGcaccACCGUCUGCa -3'
miRNA:   3'- ggUGGGCGC--------------UGGAGgCC----UGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 30841 0.77 0.314531
Target:  5'- aCGCUgGUGGCCgUCUGGGCCGUCcGCg -3'
miRNA:   3'- gGUGGgCGCUGG-AGGCCUGGCAGaCG- -5'
14452 3' -60.1 NC_003521.1 + 195181 0.72 0.54003
Target:  5'- gCCGgacCCCGCGGag-CCGGcggcggugGCCGUCUGCg -3'
miRNA:   3'- -GGU---GGGCGCUggaGGCC--------UGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 16805 0.76 0.342046
Target:  5'- cCCGCCC-CGACCgCCGGGCCcgccgCUGCc -3'
miRNA:   3'- -GGUGGGcGCUGGaGGCCUGGca---GACG- -5'
14452 3' -60.1 NC_003521.1 + 205859 0.74 0.468487
Target:  5'- gCGCCCGCGAUCUggCC-GACC-UCUGCg -3'
miRNA:   3'- gGUGGGCGCUGGA--GGcCUGGcAGACG- -5'
14452 3' -60.1 NC_003521.1 + 170443 0.72 0.56784
Target:  5'- aCGCCCGCuACCUCUaccGCCGcCUGCg -3'
miRNA:   3'- gGUGGGCGcUGGAGGcc-UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 57027 0.71 0.605435
Target:  5'- uCCgACCUGCGAUCcggacggauuUCgGGACCGUCgcaGCa -3'
miRNA:   3'- -GG-UGGGCGCUGG----------AGgCCUGGCAGa--CG- -5'
14452 3' -60.1 NC_003521.1 + 138384 0.75 0.402125
Target:  5'- aUCugCCGCGGCCUgCGG-CgCGUCUGg -3'
miRNA:   3'- -GGugGGCGCUGGAgGCCuG-GCAGACg -5'
14452 3' -60.1 NC_003521.1 + 24701 0.74 0.459879
Target:  5'- cUCugCCGCGGCCUCCGcGCCG-C-GCu -3'
miRNA:   3'- -GGugGGCGCUGGAGGCcUGGCaGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.