miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 125776 0.66 0.99969
Target:  5'- cUCCGAcgUGGAC-CCAAAAUCgaAGCGc -3'
miRNA:   3'- -AGGCUa-GCUUGuGGUUUUAGggUCGU- -5'
14453 3' -49.7 NC_003521.1 + 153140 0.66 0.99969
Target:  5'- gCCucUCGGGCGCCuccacgCUCAGCAa -3'
miRNA:   3'- aGGcuAGCUUGUGGuuuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 214806 0.66 0.99969
Target:  5'- aCCGccGUCGGGCGCCGGg--CgCGGCGa -3'
miRNA:   3'- aGGC--UAGCUUGUGGUUuuaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 109687 0.66 0.99969
Target:  5'- -gCGAUCGGccgaggggucGCGCUGucccuUCCCGGCAg -3'
miRNA:   3'- agGCUAGCU----------UGUGGUuuu--AGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 56669 0.66 0.99969
Target:  5'- cCCGcUCGcGCACC-AGGUCgCAGUAg -3'
miRNA:   3'- aGGCuAGCuUGUGGuUUUAGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 117760 0.66 0.99969
Target:  5'- cUCC--UCGc-CGCCGccGUCCCAGCAg -3'
miRNA:   3'- -AGGcuAGCuuGUGGUuuUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 212710 0.66 0.99969
Target:  5'- uUUCGAUC---CGCCAGGGUaCCAGCAu -3'
miRNA:   3'- -AGGCUAGcuuGUGGUUUUAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 92125 0.66 0.999683
Target:  5'- cCCGGgugcgguUCGGGCGgCGGGGcuUCCCGGCu -3'
miRNA:   3'- aGGCU-------AGCUUGUgGUUUU--AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 129602 0.66 0.999683
Target:  5'- gCCGcgacgcucuaauaGUCGAGuCGCCGGccgCCCGGCGg -3'
miRNA:   3'- aGGC-------------UAGCUU-GUGGUUuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 93477 0.66 0.999612
Target:  5'- cCCGaAUCGGACGaggacgaagaguCCGAGGgcgCCUAGCGc -3'
miRNA:   3'- aGGC-UAGCUUGU------------GGUUUUa--GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 161065 0.66 0.999612
Target:  5'- gCCGGUCcu-CACCGg---CCCGGCGc -3'
miRNA:   3'- aGGCUAGcuuGUGGUuuuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 233030 0.66 0.999612
Target:  5'- cCCGAc---ACGCCGuAAUCUCAGCAa -3'
miRNA:   3'- aGGCUagcuUGUGGUuUUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 38236 0.66 0.999612
Target:  5'- gCCGAggaGAgcauugACGCCGGuGAUCUCAGCGg -3'
miRNA:   3'- aGGCUag-CU------UGUGGUU-UUAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 123401 0.66 0.999612
Target:  5'- gCCGcgCGGAC-CCGAGAUgccgcccuccaCCCGGUg -3'
miRNA:   3'- aGGCuaGCUUGuGGUUUUA-----------GGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 103696 0.66 0.999612
Target:  5'- gUCCGAgcgucCGAACGCgggcuCGGAA-CCUAGCAg -3'
miRNA:   3'- -AGGCUa----GCUUGUG-----GUUUUaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 31733 0.66 0.999612
Target:  5'- aUCUGAUCcuGAACAUCAu--UCCCuGUAu -3'
miRNA:   3'- -AGGCUAG--CUUGUGGUuuuAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 45437 0.66 0.999603
Target:  5'- cUCCGAUuacgguaCGGGCGCCuc-GUCCUcgGGCGu -3'
miRNA:   3'- -AGGCUA-------GCUUGUGGuuuUAGGG--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 226426 0.66 0.999517
Target:  5'- cUCCGAgcgCGAcACGCCGuAGcgCgCCAGCu -3'
miRNA:   3'- -AGGCUa--GCU-UGUGGU-UUuaG-GGUCGu -5'
14453 3' -49.7 NC_003521.1 + 148917 0.66 0.999517
Target:  5'- gCCGcggcAUCGAGCACCGcAGcgCCguGCu -3'
miRNA:   3'- aGGC----UAGCUUGUGGU-UUuaGGguCGu -5'
14453 3' -49.7 NC_003521.1 + 33485 0.66 0.999517
Target:  5'- cCCaGAucUCGGGCGCCAcgcgAGcgUCCGGCAc -3'
miRNA:   3'- aGG-CU--AGCUUGUGGU----UUuaGGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.