miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 5' -58.3 NC_003521.1 + 86518 0.66 0.917723
Target:  5'- uCUUCCCGcGuCGGCCCCGGacgcCGUGCCGc -3'
miRNA:   3'- -GGGGGGU-C-GUUGGGGCUa---GCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 12378 0.66 0.917723
Target:  5'- aCCCUCCGGCcucuuucACgCCGAguUCGUGCUg- -3'
miRNA:   3'- -GGGGGGUCGu------UGgGGCU--AGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 164243 0.66 0.917723
Target:  5'- uCCCCCUGGUuuCCagaAUCGUGCCGg -3'
miRNA:   3'- -GGGGGGUCGuuGGggcUAGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 112013 0.66 0.916076
Target:  5'- gCCCCaCCGGgAaaacguucugcgguGCCCCGAccgCGUACUg- -3'
miRNA:   3'- -GGGG-GGUCgU--------------UGGGGCUa--GCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 83805 0.66 0.912158
Target:  5'- gCCCCCGaaaccuGCuACUCCcGUUGUGCCGUa -3'
miRNA:   3'- gGGGGGU------CGuUGGGGcUAGCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 63107 0.66 0.912158
Target:  5'- gCCCUCCAGCAguACCagcaGAUgGUcaGCCAg -3'
miRNA:   3'- -GGGGGGUCGU--UGGgg--CUAgCA--UGGUa -5'
14453 5' -58.3 NC_003521.1 + 143815 0.66 0.912158
Target:  5'- aCCCgC-GCAACCCCagcgaGAUCGUGCgCGc -3'
miRNA:   3'- gGGGgGuCGUUGGGG-----CUAGCAUG-GUa -5'
14453 5' -58.3 NC_003521.1 + 22978 0.66 0.906376
Target:  5'- aCCCCCCcccccCCCCGAgagacgacacacUCGUACCc- -3'
miRNA:   3'- -GGGGGGucguuGGGGCU------------AGCAUGGua -5'
14453 5' -58.3 NC_003521.1 + 73432 0.66 0.906376
Target:  5'- cCCCCaCUAGCGugCCCGcgucgcucgauAUCuGUACCc- -3'
miRNA:   3'- -GGGG-GGUCGUugGGGC-----------UAG-CAUGGua -5'
14453 5' -58.3 NC_003521.1 + 6148 0.66 0.906376
Target:  5'- gCCCCaggaagagCAGCAACCCCuggCGggGCCAg -3'
miRNA:   3'- -GGGGg-------GUCGUUGGGGcuaGCa-UGGUa -5'
14453 5' -58.3 NC_003521.1 + 190665 0.66 0.906376
Target:  5'- ---aCCAGCAACCCCGAgaucaGUaacACCAa -3'
miRNA:   3'- ggggGGUCGUUGGGGCUag---CA---UGGUa -5'
14453 5' -58.3 NC_003521.1 + 36592 0.66 0.906376
Target:  5'- aUCCUCCAGC--CCCUGAUC--ACCAa -3'
miRNA:   3'- -GGGGGGUCGuuGGGGCUAGcaUGGUa -5'
14453 5' -58.3 NC_003521.1 + 212982 0.66 0.900381
Target:  5'- uUgCCCAGCGgcucGCCCUGGUgaaacuggaucUGUACCAUg -3'
miRNA:   3'- gGgGGGUCGU----UGGGGCUA-----------GCAUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 18903 0.66 0.900381
Target:  5'- gCgCCgCGGCAGCCCCGAagGguggcGCCGc -3'
miRNA:   3'- -GgGGgGUCGUUGGGGCUagCa----UGGUa -5'
14453 5' -58.3 NC_003521.1 + 148751 0.66 0.900381
Target:  5'- aCCCCCCGac--CCCCGGUCc-GCCAUc -3'
miRNA:   3'- -GGGGGGUcguuGGGGCUAGcaUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 26328 0.66 0.900381
Target:  5'- -aUCCCAGCAacGCCCUGGUCuuagGCCu- -3'
miRNA:   3'- ggGGGGUCGU--UGGGGCUAGca--UGGua -5'
14453 5' -58.3 NC_003521.1 + 100896 0.66 0.89977
Target:  5'- gCCUUCCGGCcguGCCCCGAggagcagcgcgccUCcUACCAg -3'
miRNA:   3'- -GGGGGGUCGu--UGGGGCU-------------AGcAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 135151 0.66 0.894174
Target:  5'- aCCCCaucgGGCAACU--GAUCGUGCCGc -3'
miRNA:   3'- gGGGGg---UCGUUGGggCUAGCAUGGUa -5'
14453 5' -58.3 NC_003521.1 + 107829 0.66 0.894174
Target:  5'- gUCCCCGuccCAACCCCGGUCccccguUACCGUc -3'
miRNA:   3'- gGGGGGUc--GUUGGGGCUAGc-----AUGGUA- -5'
14453 5' -58.3 NC_003521.1 + 194388 0.66 0.894174
Target:  5'- gCCCCC-GCAGCCCCGc-CGgaUACCc- -3'
miRNA:   3'- gGGGGGuCGUUGGGGCuaGC--AUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.