miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 16511 0.66 0.835825
Target:  5'- -cGGGCUgcgGCGCUCGGCUCGGcUGGa -3'
miRNA:   3'- ccCCCGAga-UGUGGGUCGGGUCcACC- -5'
14464 3' -60.6 NC_003521.1 + 138789 0.66 0.828013
Target:  5'- --cGGCcgugCUGCGCgCCguGGCCCAGGUGc -3'
miRNA:   3'- cccCCGa---GAUGUG-GG--UCGGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 20320 0.66 0.828013
Target:  5'- aGGaGGCcaccacgCUGCugCUcuCCCGGGUGGa -3'
miRNA:   3'- cCC-CCGa------GAUGugGGucGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 115642 0.66 0.820045
Target:  5'- aGGGGCUCgugcgugucgGCGcCCCAGUggCGGGUGa -3'
miRNA:   3'- cCCCCGAGa---------UGU-GGGUCGg-GUCCACc -5'
14464 3' -60.6 NC_003521.1 + 184781 0.66 0.811926
Target:  5'- uGGGGCaacgcGCGCCUggacGCCCuGGUGGc -3'
miRNA:   3'- cCCCCGaga--UGUGGGu---CGGGuCCACC- -5'
14464 3' -60.6 NC_003521.1 + 238814 0.66 0.811926
Target:  5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3'
miRNA:   3'- cCCCCGagaUGUGGguCGGG--UCCACc -5'
14464 3' -60.6 NC_003521.1 + 165451 0.66 0.811926
Target:  5'- aGGGGUg--GCagGCCUugAGCaCCAGGUGGc -3'
miRNA:   3'- cCCCCGagaUG--UGGG--UCG-GGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 38587 0.66 0.811926
Target:  5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3'
miRNA:   3'- cCCCCGagaUGUGGguCGGG--UCCACc -5'
14464 3' -60.6 NC_003521.1 + 149031 0.66 0.811926
Target:  5'- uGGGGGU-----GCCCAaccgccGCCCGGGUGu -3'
miRNA:   3'- -CCCCCGagaugUGGGU------CGGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 130979 0.66 0.811106
Target:  5'- uGGGGGCagUGagcacggUACCCAGCCUgacgcGGGcGGc -3'
miRNA:   3'- -CCCCCGagAU-------GUGGGUCGGG-----UCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 38341 0.66 0.811106
Target:  5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3'
miRNA:   3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5'
14464 3' -60.6 NC_003521.1 + 238568 0.66 0.811106
Target:  5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3'
miRNA:   3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5'
14464 3' -60.6 NC_003521.1 + 238475 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 38247 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 47832 0.67 0.795266
Target:  5'- cGGGGUUUUGCAgUCCAGgaCGGGUGa -3'
miRNA:   3'- cCCCCGAGAUGU-GGGUCggGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 6532 0.67 0.795266
Target:  5'- -aGGGCggUCUGCGuCCCGcCCCAGGgcaGGg -3'
miRNA:   3'- ccCCCG--AGAUGU-GGGUcGGGUCCa--CC- -5'
14464 3' -60.6 NC_003521.1 + 157063 0.67 0.786739
Target:  5'- gGGGGGCgccgcCACCCuGuCCCAGGc-- -3'
miRNA:   3'- -CCCCCGagau-GUGGGuC-GGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 115826 0.67 0.786739
Target:  5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3'
miRNA:   3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 84890 0.67 0.77809
Target:  5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3'
miRNA:   3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 4214 0.67 0.77809
Target:  5'- aGGGGGUUUga-AgCCGGcCCCGGGaGGa -3'
miRNA:   3'- -CCCCCGAGaugUgGGUC-GGGUCCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.