Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14464 | 3' | -60.6 | NC_003521.1 | + | 16511 | 0.66 | 0.835825 |
Target: 5'- -cGGGCUgcgGCGCUCGGCUCGGcUGGa -3' miRNA: 3'- ccCCCGAga-UGUGGGUCGGGUCcACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 138789 | 0.66 | 0.828013 |
Target: 5'- --cGGCcgugCUGCGCgCCguGGCCCAGGUGc -3' miRNA: 3'- cccCCGa---GAUGUG-GG--UCGGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 20320 | 0.66 | 0.828013 |
Target: 5'- aGGaGGCcaccacgCUGCugCUcuCCCGGGUGGa -3' miRNA: 3'- cCC-CCGa------GAUGugGGucGGGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 115642 | 0.66 | 0.820045 |
Target: 5'- aGGGGCUCgugcgugucgGCGcCCCAGUggCGGGUGa -3' miRNA: 3'- cCCCCGAGa---------UGU-GGGUCGg-GUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 184781 | 0.66 | 0.811926 |
Target: 5'- uGGGGCaacgcGCGCCUggacGCCCuGGUGGc -3' miRNA: 3'- cCCCCGaga--UGUGGGu---CGGGuCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 238814 | 0.66 | 0.811926 |
Target: 5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3' miRNA: 3'- cCCCCGagaUGUGGguCGGG--UCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 165451 | 0.66 | 0.811926 |
Target: 5'- aGGGGUg--GCagGCCUugAGCaCCAGGUGGc -3' miRNA: 3'- cCCCCGagaUG--UGGG--UCG-GGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 38587 | 0.66 | 0.811926 |
Target: 5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3' miRNA: 3'- cCCCCGagaUGUGGguCGGG--UCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 149031 | 0.66 | 0.811926 |
Target: 5'- uGGGGGU-----GCCCAaccgccGCCCGGGUGu -3' miRNA: 3'- -CCCCCGagaugUGGGU------CGGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 130979 | 0.66 | 0.811106 |
Target: 5'- uGGGGGCagUGagcacggUACCCAGCCUgacgcGGGcGGc -3' miRNA: 3'- -CCCCCGagAU-------GUGGGUCGGG-----UCCaCC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 38341 | 0.66 | 0.811106 |
Target: 5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3' miRNA: 3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 238568 | 0.66 | 0.811106 |
Target: 5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3' miRNA: 3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 238475 | 0.66 | 0.803665 |
Target: 5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3' miRNA: 3'- cCCCCGagaUgUGgGUCGGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 38247 | 0.66 | 0.803665 |
Target: 5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3' miRNA: 3'- cCCCCGagaUgUGgGUCGGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 47832 | 0.67 | 0.795266 |
Target: 5'- cGGGGUUUUGCAgUCCAGgaCGGGUGa -3' miRNA: 3'- cCCCCGAGAUGU-GGGUCggGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 6532 | 0.67 | 0.795266 |
Target: 5'- -aGGGCggUCUGCGuCCCGcCCCAGGgcaGGg -3' miRNA: 3'- ccCCCG--AGAUGU-GGGUcGGGUCCa--CC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 157063 | 0.67 | 0.786739 |
Target: 5'- gGGGGGCgccgcCACCCuGuCCCAGGc-- -3' miRNA: 3'- -CCCCCGagau-GUGGGuC-GGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 115826 | 0.67 | 0.786739 |
Target: 5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3' miRNA: 3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 84890 | 0.67 | 0.77809 |
Target: 5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3' miRNA: 3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 4214 | 0.67 | 0.77809 |
Target: 5'- aGGGGGUUUga-AgCCGGcCCCGGGaGGa -3' miRNA: 3'- -CCCCCGAGaugUgGGUC-GGGUCCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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