miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 3' -58 NC_003521.1 + 111581 0.66 0.923003
Target:  5'- cCGGCGGGuuccggacugcGUGGuagucuuccUCUCGcCCCGCgGCGa -3'
miRNA:   3'- -GUCGCCC-----------UACU---------AGAGC-GGGUGgUGCa -5'
14479 3' -58 NC_003521.1 + 167289 0.66 0.923003
Target:  5'- gAGCGuGAUGuUCUCGUUCuCCACGg -3'
miRNA:   3'- gUCGCcCUACuAGAGCGGGuGGUGCa -5'
14479 3' -58 NC_003521.1 + 129562 0.66 0.922475
Target:  5'- aCGGCGGGcccgacgAUGGcugCUcCGCCgCGCCGCGc -3'
miRNA:   3'- -GUCGCCC-------UACUa--GA-GCGG-GUGGUGCa -5'
14479 3' -58 NC_003521.1 + 127829 0.66 0.917628
Target:  5'- aGGUGcccGGGUGGUaguggCGCCCGCCGCu- -3'
miRNA:   3'- gUCGC---CCUACUAga---GCGGGUGGUGca -5'
14479 3' -58 NC_003521.1 + 165754 0.66 0.917628
Target:  5'- gGGCGGcGgcGG-CUUGCCCAUCAuCGUg -3'
miRNA:   3'- gUCGCC-CuaCUaGAGCGGGUGGU-GCA- -5'
14479 3' -58 NC_003521.1 + 178814 0.66 0.917628
Target:  5'- cCGGCGGGcgGGUCgaUCGacgagaagauguCCCGCUGCGc -3'
miRNA:   3'- -GUCGCCCuaCUAG--AGC------------GGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 115851 0.66 0.912035
Target:  5'- aGGCGGGcgGcgCaCGCCUcgucaaacacgGCCGCGUu -3'
miRNA:   3'- gUCGCCCuaCuaGaGCGGG-----------UGGUGCA- -5'
14479 3' -58 NC_003521.1 + 151563 0.66 0.912035
Target:  5'- -cGCGGGc--GUCUCGUgUCACCGCGUc -3'
miRNA:   3'- guCGCCCuacUAGAGCG-GGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 175323 0.66 0.912035
Target:  5'- aCAGCGcucGAUGAaggUCGCCUGCCugGUc -3'
miRNA:   3'- -GUCGCc--CUACUag-AGCGGGUGGugCA- -5'
14479 3' -58 NC_003521.1 + 16119 0.66 0.912035
Target:  5'- gGGCGGGAcgUGAaCUuccacaCGCCCgggcGCCACGc -3'
miRNA:   3'- gUCGCCCU--ACUaGA------GCGGG----UGGUGCa -5'
14479 3' -58 NC_003521.1 + 86770 0.66 0.906224
Target:  5'- aGGCGcGaGAgcuUGAUCUCcauggGCaCCACCGCGUa -3'
miRNA:   3'- gUCGC-C-CU---ACUAGAG-----CG-GGUGGUGCA- -5'
14479 3' -58 NC_003521.1 + 53432 0.66 0.893958
Target:  5'- gCAGCGGaa-GGUCUCGUUCACCAg-- -3'
miRNA:   3'- -GUCGCCcuaCUAGAGCGGGUGGUgca -5'
14479 3' -58 NC_003521.1 + 223005 0.66 0.893958
Target:  5'- uGGCGGuGggGGUCgUCGUCCGCCGg-- -3'
miRNA:   3'- gUCGCC-CuaCUAG-AGCGGGUGGUgca -5'
14479 3' -58 NC_003521.1 + 150709 0.66 0.893958
Target:  5'- cCGGCGGcGAcUGGcUCUCGgCCguggGCCACGUc -3'
miRNA:   3'- -GUCGCC-CU-ACU-AGAGCgGG----UGGUGCA- -5'
14479 3' -58 NC_003521.1 + 101196 0.67 0.887508
Target:  5'- cCGGCGGGcgGAUCUUGaCCGagaugugCACGUu -3'
miRNA:   3'- -GUCGCCCuaCUAGAGCgGGUg------GUGCA- -5'
14479 3' -58 NC_003521.1 + 223110 0.67 0.887508
Target:  5'- -uGCGGGAUGGcggccgUCUCGCgCAgCACc- -3'
miRNA:   3'- guCGCCCUACU------AGAGCGgGUgGUGca -5'
14479 3' -58 NC_003521.1 + 136788 0.67 0.88085
Target:  5'- aCAGCGGGcucacGGUCacgcUGCCCGCCgACGa -3'
miRNA:   3'- -GUCGCCCua---CUAGa---GCGGGUGG-UGCa -5'
14479 3' -58 NC_003521.1 + 126390 0.67 0.878813
Target:  5'- -cGCGGGucuggugccgccacaGGUCUCgGCCCugCGCGa -3'
miRNA:   3'- guCGCCCua-------------CUAGAG-CGGGugGUGCa -5'
14479 3' -58 NC_003521.1 + 111603 0.67 0.87399
Target:  5'- cCAGCGGcGccGGaCU-GCCCACCACGc -3'
miRNA:   3'- -GUCGCC-CuaCUaGAgCGGGUGGUGCa -5'
14479 3' -58 NC_003521.1 + 172546 0.67 0.86693
Target:  5'- aGGCGGGG-GAUCUCGUgCCGCUgucccggggucgGCGg -3'
miRNA:   3'- gUCGCCCUaCUAGAGCG-GGUGG------------UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.