Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14480 | 3' | -57.6 | NC_003521.1 | + | 187593 | 0.77 | 0.402785 |
Target: 5'- -cCGCUUUCUGCuGcCGGugGGCACGGc -3' miRNA: 3'- ucGCGAAGGACG-CaGUCugCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 167160 | 0.71 | 0.700974 |
Target: 5'- gGGCGCcUCggGCGUCuuggAGGCGGcCGCGGc -3' miRNA: 3'- -UCGCGaAGgaCGCAG----UCUGCC-GUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 170265 | 0.71 | 0.723843 |
Target: 5'- cAGCGCUUUCUGCGcgaguggcugcugugUCGGcCGGCcgagcgcgagGCGGu -3' miRNA: 3'- -UCGCGAAGGACGC---------------AGUCuGCCG----------UGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 92304 | 0.65 | 0.939931 |
Target: 5'- aGGCGCgggaggagGCG-CAGccGCGGCAUGGg -3' miRNA: 3'- -UCGCGaagga---CGCaGUC--UGCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 52632 | 0.75 | 0.489578 |
Target: 5'- gGGUGa-UCCUGCGUCGGcccucGCGGCACGc -3' miRNA: 3'- -UCGCgaAGGACGCAGUC-----UGCCGUGCc -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 108023 | 0.74 | 0.517304 |
Target: 5'- cGC-CUUCgucgGCGUCAGGCGGCgGCGGg -3' miRNA: 3'- uCGcGAAGga--CGCAGUCUGCCG-UGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 223931 | 0.73 | 0.584136 |
Target: 5'- aGGCGCggCCgaggGgGUCgAGGCGGcCGCGGg -3' miRNA: 3'- -UCGCGaaGGa---CgCAG-UCUGCC-GUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 90907 | 0.73 | 0.584136 |
Target: 5'- gGGCGCguuaucgUCCU-CGUCggaggaggGGugGGCGCGGg -3' miRNA: 3'- -UCGCGa------AGGAcGCAG--------UCugCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 104156 | 0.72 | 0.623137 |
Target: 5'- cGGUGCU--CUGCGgc-GGCGGCGCGGg -3' miRNA: 3'- -UCGCGAagGACGCaguCUGCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 45759 | 0.71 | 0.691348 |
Target: 5'- uAGCGCgagaCC-GCGUCAGgaaGCGGCggACGGg -3' miRNA: 3'- -UCGCGaa--GGaCGCAGUC---UGCCG--UGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 112742 | 0.72 | 0.671971 |
Target: 5'- cGCGCUUCCaGCG-CgagcccauGGGCGGCAuCGGc -3' miRNA: 3'- uCGCGAAGGaCGCaG--------UCUGCCGU-GCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 14924 | 0.72 | 0.619225 |
Target: 5'- cGGCGCUUCgaGCGcgagcggcagcgcCAGACGcGCAUGGa -3' miRNA: 3'- -UCGCGAAGgaCGCa------------GUCUGC-CGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 207261 | 0.76 | 0.419367 |
Target: 5'- cGGCGCUUcucgugCCUGCGUCAGGcCGGC-CGc -3' miRNA: 3'- -UCGCGAA------GGACGCAGUCU-GCCGuGCc -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 23557 | 0.71 | 0.681678 |
Target: 5'- cAGCGCcugcUCCU-CGUCcgucaugguGGugGGCGCGGg -3' miRNA: 3'- -UCGCGa---AGGAcGCAG---------UCugCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 45075 | 0.76 | 0.419367 |
Target: 5'- cGCGCgUCCUGCGUgAGGUGGCGCa- -3' miRNA: 3'- uCGCGaAGGACGCAgUCUGCCGUGcc -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 116663 | 0.73 | 0.600672 |
Target: 5'- aGGCGCUaucgCCUGCacggCAGcggcggcggaggcaGCGGCGCGGg -3' miRNA: 3'- -UCGCGAa---GGACGca--GUC--------------UGCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 111067 | 0.71 | 0.689418 |
Target: 5'- aGGCGCgguagaggGCGgcgaAGACGGCGCGGa -3' miRNA: 3'- -UCGCGaagga---CGCag--UCUGCCGUGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 132470 | 0.71 | 0.710546 |
Target: 5'- uGGUGCUucgUCCUGUGUCAGguuGCGGCcCa- -3' miRNA: 3'- -UCGCGA---AGGACGCAGUC---UGCCGuGcc -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 16088 | 0.75 | 0.489578 |
Target: 5'- cGCGCUggccgCCUGCGUCGG-CGaGCaccACGGg -3' miRNA: 3'- uCGCGAa----GGACGCAGUCuGC-CG---UGCC- -5' |
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14480 | 3' | -57.6 | NC_003521.1 | + | 117491 | 0.74 | 0.526687 |
Target: 5'- cGGCGCUggggCCgucgGUGuUCGGACGGCugGa -3' miRNA: 3'- -UCGCGAa---GGa---CGC-AGUCUGCCGugCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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