miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 3' -51.7 NC_003521.1 + 217410 0.66 0.997007
Target:  5'- --uGAGCGGCGGCAUGAagccggUGCAg -3'
miRNA:   3'- gcuCUCGUCGCUGUACUacuag-ACGU- -5'
14485 3' -51.7 NC_003521.1 + 127783 0.66 0.997007
Target:  5'- --cGGGCGGCGGCcguagccgcacGUGcuccAUGAUCUGCc -3'
miRNA:   3'- gcuCUCGUCGCUG-----------UAC----UACUAGACGu -5'
14485 3' -51.7 NC_003521.1 + 193185 0.66 0.996485
Target:  5'- gCGGGAGCGGCGgaGCGUGAaGAagCgagagggGCAg -3'
miRNA:   3'- -GCUCUCGUCGC--UGUACUaCUa-Ga------CGU- -5'
14485 3' -51.7 NC_003521.1 + 73141 0.66 0.996485
Target:  5'- gCGGGGGCAGCGGCG-GcgGcgCcGCc -3'
miRNA:   3'- -GCUCUCGUCGCUGUaCuaCuaGaCGu -5'
14485 3' -51.7 NC_003521.1 + 20718 0.66 0.995891
Target:  5'- ---uGGCGcGUGACGUGAUGAUCgucaGCGg -3'
miRNA:   3'- gcucUCGU-CGCUGUACUACUAGa---CGU- -5'
14485 3' -51.7 NC_003521.1 + 77792 0.66 0.995891
Target:  5'- uCGucaAGCAGCGAgGUGuagaugcgGAUCUGCu -3'
miRNA:   3'- -GCuc-UCGUCGCUgUACua------CUAGACGu -5'
14485 3' -51.7 NC_003521.1 + 111951 0.66 0.995891
Target:  5'- -uGGcGCGGCGGCAgGAUGAgUCUGUu -3'
miRNA:   3'- gcUCuCGUCGCUGUaCUACU-AGACGu -5'
14485 3' -51.7 NC_003521.1 + 8092 0.66 0.99589
Target:  5'- aGGGAucGCAGCGGCucgGAgucGUCUGCc -3'
miRNA:   3'- gCUCU--CGUCGCUGua-CUac-UAGACGu -5'
14485 3' -51.7 NC_003521.1 + 198790 0.66 0.99589
Target:  5'- uGGGuAGCAGCuGCGUGGUGccggcggcGUCUGUc -3'
miRNA:   3'- gCUC-UCGUCGcUGUACUAC--------UAGACGu -5'
14485 3' -51.7 NC_003521.1 + 195725 0.66 0.995216
Target:  5'- cCGcAG-GUAGCGGCuggGGUGAUCggGCAc -3'
miRNA:   3'- -GC-UCuCGUCGCUGua-CUACUAGa-CGU- -5'
14485 3' -51.7 NC_003521.1 + 28078 0.66 0.995216
Target:  5'- --uGAGCAGCGcCAcguUGGUGGccaccauccUCUGCAu -3'
miRNA:   3'- gcuCUCGUCGCuGU---ACUACU---------AGACGU- -5'
14485 3' -51.7 NC_003521.1 + 136025 0.66 0.995216
Target:  5'- gGGGAuCAGCGAgGUGGcggUGAUCgagggGCAg -3'
miRNA:   3'- gCUCUcGUCGCUgUACU---ACUAGa----CGU- -5'
14485 3' -51.7 NC_003521.1 + 155785 0.66 0.995216
Target:  5'- aGAGAaacGCAGCGGCuAUcGUGuAUCUGUAc -3'
miRNA:   3'- gCUCU---CGUCGCUG-UAcUAC-UAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 211815 0.66 0.995144
Target:  5'- gGAGAGCAGCuugaGCGcgcccUGGUGGucgucguugagcuUCUGCAg -3'
miRNA:   3'- gCUCUCGUCGc---UGU-----ACUACU-------------AGACGU- -5'
14485 3' -51.7 NC_003521.1 + 80983 0.66 0.995071
Target:  5'- gCGAGuAGCAGCGGCccuucuccuUGGUgUGCAu -3'
miRNA:   3'- -GCUC-UCGUCGCUGuacu-----ACUAgACGU- -5'
14485 3' -51.7 NC_003521.1 + 19163 0.66 0.99477
Target:  5'- cCGAGAGCA-CGGCGcUGGUGGccgacgugcacgagCUGCAg -3'
miRNA:   3'- -GCUCUCGUcGCUGU-ACUACUa-------------GACGU- -5'
14485 3' -51.7 NC_003521.1 + 76319 0.67 0.993953
Target:  5'- gGAGguGGCGGCGACAgcugcggaggcgacGGUGAcggCUGCGg -3'
miRNA:   3'- gCUC--UCGUCGCUGUa-------------CUACUa--GACGU- -5'
14485 3' -51.7 NC_003521.1 + 130495 0.67 0.993598
Target:  5'- gCGAGcgcGGCcGCGuCAUGAUGGccCUGCGg -3'
miRNA:   3'- -GCUC---UCGuCGCuGUACUACUa-GACGU- -5'
14485 3' -51.7 NC_003521.1 + 203920 0.67 0.993598
Target:  5'- gCGAGAuGUAGCG-CGUGAUGcgCUuGUg -3'
miRNA:   3'- -GCUCU-CGUCGCuGUACUACuaGA-CGu -5'
14485 3' -51.7 NC_003521.1 + 127393 0.67 0.993598
Target:  5'- -aAGGGCGGCcACAggcGGUGGUCgUGCAg -3'
miRNA:   3'- gcUCUCGUCGcUGUa--CUACUAG-ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.