miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 5' -55.2 NC_003521.1 + 119242 0.66 0.97434
Target:  5'- uGUGCUCGCUGgagaaCACGC-GCgUGGUCa -3'
miRNA:   3'- gCACGAGUGGUa----GUGCGgCG-ACUAGa -5'
14485 5' -55.2 NC_003521.1 + 122235 0.66 0.97434
Target:  5'- gGUGCcggcgacugagCGCCGcCACGUCGCUGggCg -3'
miRNA:   3'- gCACGa----------GUGGUaGUGCGGCGACuaGa -5'
14485 5' -55.2 NC_003521.1 + 19714 0.66 0.97434
Target:  5'- -cUGCUgACCuaCACGCUGCUGAc-- -3'
miRNA:   3'- gcACGAgUGGuaGUGCGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 220929 0.66 0.97434
Target:  5'- --cGCUC-CCG-CACGCCGUUG-UCg -3'
miRNA:   3'- gcaCGAGuGGUaGUGCGGCGACuAGa -5'
14485 5' -55.2 NC_003521.1 + 40333 0.66 0.972771
Target:  5'- gGUGCgCGCCGccaguuuggccaggaUCACGgCGCUGcgCa -3'
miRNA:   3'- gCACGaGUGGU---------------AGUGCgGCGACuaGa -5'
14485 5' -55.2 NC_003521.1 + 100698 0.66 0.971688
Target:  5'- -aUGCggaggCGCCGcCGCgGCCGCUGAUg- -3'
miRNA:   3'- gcACGa----GUGGUaGUG-CGGCGACUAga -5'
14485 5' -55.2 NC_003521.1 + 139856 0.66 0.971687
Target:  5'- cCGUGCgCGCCGggCACGgCGCUucuGUCUg -3'
miRNA:   3'- -GCACGaGUGGUa-GUGCgGCGAc--UAGA- -5'
14485 5' -55.2 NC_003521.1 + 108450 0.66 0.970005
Target:  5'- -cUGCaUCACCGUCugGCucgcccugguguacuCGCUGAUg- -3'
miRNA:   3'- gcACG-AGUGGUAGugCG---------------GCGACUAga -5'
14485 5' -55.2 NC_003521.1 + 221069 0.66 0.970005
Target:  5'- gCGgugGCUgaaguggaagcccgaCGCCGUCAcCGCCacGCUGGUCa -3'
miRNA:   3'- -GCa--CGA---------------GUGGUAGU-GCGG--CGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 171412 0.66 0.968844
Target:  5'- gGUGCgcgccgUCACCGUCccGCGuCUGCUGcGUCUc -3'
miRNA:   3'- gCACG------AGUGGUAG--UGC-GGCGAC-UAGA- -5'
14485 5' -55.2 NC_003521.1 + 185370 0.66 0.965802
Target:  5'- aGUGcCUCuuCCAgCGCGCCGCccaGAUCc -3'
miRNA:   3'- gCAC-GAGu-GGUaGUGCGGCGa--CUAGa -5'
14485 5' -55.2 NC_003521.1 + 212107 0.66 0.965802
Target:  5'- gCGUGCgcCACCAUCugG-CGCacGGUCg -3'
miRNA:   3'- -GCACGa-GUGGUAGugCgGCGa-CUAGa -5'
14485 5' -55.2 NC_003521.1 + 165278 0.66 0.965802
Target:  5'- gCGUaGC-CGCCGccgGCGCCGCUGAaCUg -3'
miRNA:   3'- -GCA-CGaGUGGUag-UGCGGCGACUaGA- -5'
14485 5' -55.2 NC_003521.1 + 104157 0.66 0.965802
Target:  5'- gGUGCUCugCGgcgGCGgCGCgGGUCg -3'
miRNA:   3'- gCACGAGugGUag-UGCgGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 49471 0.67 0.960511
Target:  5'- -cUGCUCacacuuaugguauugGCCGUCgGCGCC-CUGAUCg -3'
miRNA:   3'- gcACGAG---------------UGGUAG-UGCGGcGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 124470 0.67 0.959104
Target:  5'- --aGCUCGgccUCGUCGgGCgGCUGGUCg -3'
miRNA:   3'- gcaCGAGU---GGUAGUgCGgCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 34698 0.67 0.959104
Target:  5'- cCGUuCUCAgCAUCGCGCagcaGCUGAc-- -3'
miRNA:   3'- -GCAcGAGUgGUAGUGCGg---CGACUaga -5'
14485 5' -55.2 NC_003521.1 + 121013 0.67 0.955439
Target:  5'- gCGUGCgCACCAccgugUCGCcCCGCUGGc-- -3'
miRNA:   3'- -GCACGaGUGGU-----AGUGcGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 24640 0.67 0.951556
Target:  5'- gGUGCUCAgcgccuUCGUCcugGCGCUGgUGGUCa -3'
miRNA:   3'- gCACGAGU------GGUAG---UGCGGCgACUAGa -5'
14485 5' -55.2 NC_003521.1 + 88751 0.67 0.951556
Target:  5'- --aGgaCGCCAUCACGCaGCUGAa-- -3'
miRNA:   3'- gcaCgaGUGGUAGUGCGgCGACUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.