miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 5' -50.3 NC_003521.1 + 68390 0.66 0.99962
Target:  5'- aGGUgGACGCCGuGAGAUGccGGcuGg -3'
miRNA:   3'- gCCAgCUGUGGUcUUCUACuaCCuuC- -5'
14493 5' -50.3 NC_003521.1 + 193301 0.66 0.999528
Target:  5'- gGaGUCGGCGC--GggGGUGGUGGGc- -3'
miRNA:   3'- gC-CAGCUGUGguCuuCUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 178030 0.66 0.999528
Target:  5'- aCGGUCgucaaaGACGCCGGGcccgucAGGcUGGUGGGGa -3'
miRNA:   3'- -GCCAG------CUGUGGUCU------UCU-ACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 47803 0.66 0.999528
Target:  5'- uCGcGUCGACGCCAGAaagAGAccAUGcaGAAGa -3'
miRNA:   3'- -GC-CAGCUGUGGUCU---UCUacUAC--CUUC- -5'
14493 5' -50.3 NC_003521.1 + 213265 0.66 0.999528
Target:  5'- aCGcGUCGACcgcCCGGAcGAcGGUGGAGa -3'
miRNA:   3'- -GC-CAGCUGu--GGUCUuCUaCUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 28473 0.66 0.999528
Target:  5'- gCGGU--GCACCAGcggguGGUGAUGGGc- -3'
miRNA:   3'- -GCCAgcUGUGGUCuu---CUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 66883 0.66 0.999507
Target:  5'- uGGcCGAgACCAGugacgaggaggcAGAUGAgggGGAGGa -3'
miRNA:   3'- gCCaGCUgUGGUCu-----------UCUACUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 103444 0.66 0.999284
Target:  5'- gCGcGUCuGCACCAGuucgcguccgcGGAUGcgGGAGGg -3'
miRNA:   3'- -GC-CAGcUGUGGUCu----------UCUACuaCCUUC- -5'
14493 5' -50.3 NC_003521.1 + 118410 0.66 0.999284
Target:  5'- uGGUCGucGCGuCCGGGucGAUGGUGGuGGu -3'
miRNA:   3'- gCCAGC--UGU-GGUCUu-CUACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 177772 0.66 0.99924
Target:  5'- gCGGUCGuCGCCAGGGccGAcggggccuguccgcUGGUGGGc- -3'
miRNA:   3'- -GCCAGCuGUGGUCUU--CU--------------ACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 106775 0.66 0.99894
Target:  5'- gCGGUCGAaACCAGgcGuGUGuaacugcccAUGGGAGa -3'
miRNA:   3'- -GCCAGCUgUGGUCuuC-UAC---------UACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 70285 0.66 0.99894
Target:  5'- aGGUCGGCGCC-GAAGAgaaagcGGUGcAGGu -3'
miRNA:   3'- gCCAGCUGUGGuCUUCUa-----CUACcUUC- -5'
14493 5' -50.3 NC_003521.1 + 30094 0.67 0.998719
Target:  5'- aCGGccuaCGAUuCCGGGAcGGUGAUGGGAc -3'
miRNA:   3'- -GCCa---GCUGuGGUCUU-CUACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 168670 0.67 0.998719
Target:  5'- ---aCGGCGCCGGAGGucccUGGUGGcAGg -3'
miRNA:   3'- gccaGCUGUGGUCUUCu---ACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 239091 0.67 0.998462
Target:  5'- gCGGUCGcgggaggaACGCgAGggGAggggaccgGAUGGAGu -3'
miRNA:   3'- -GCCAGC--------UGUGgUCuuCUa-------CUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 98836 0.67 0.998462
Target:  5'- aGGU-GACgGCgAGGAGGUGAUGGuGGu -3'
miRNA:   3'- gCCAgCUG-UGgUCUUCUACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 82824 0.67 0.998161
Target:  5'- aGGagGGCACCGGcGGcacaGGUGGAGGu -3'
miRNA:   3'- gCCagCUGUGGUCuUCua--CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 73509 0.67 0.998161
Target:  5'- --cUCGAC-CCGGAGGAugUGGUGGgcGa -3'
miRNA:   3'- gccAGCUGuGGUCUUCU--ACUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 143385 0.67 0.997411
Target:  5'- aCGGUCGAaagcgaCGGAGGAgacgGAgGGGAGa -3'
miRNA:   3'- -GCCAGCUgug---GUCUUCUa---CUaCCUUC- -5'
14493 5' -50.3 NC_003521.1 + 199743 0.68 0.99695
Target:  5'- gCGGUCcgccCACCAGGAuGAUGAgcagguugaGGAAGg -3'
miRNA:   3'- -GCCAGcu--GUGGUCUU-CUACUa--------CCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.