miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 3' -51.1 NC_003521.1 + 84949 0.66 0.998538
Target:  5'- cCUUCAGcagcaucuCCAgGUagagCGUCAGCAGCGa- -3'
miRNA:   3'- cGAAGUU--------GGUgCA----GCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 30285 0.66 0.998538
Target:  5'- gGCgcgcuCCACGUCGUCgaAGUAGCu-- -3'
miRNA:   3'- -CGaaguuGGUGCAGCAG--UCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 140214 0.66 0.998538
Target:  5'- ---gCGGCCGaGUCGcCGuGCAGCAUGa -3'
miRNA:   3'- cgaaGUUGGUgCAGCaGU-CGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 62337 0.66 0.998538
Target:  5'- cGCaUCGACU-CGUCcuUCGGCAGCAc- -3'
miRNA:   3'- -CGaAGUUGGuGCAGc-AGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 142771 0.66 0.998538
Target:  5'- aGCguccgCGGCgGCGUCGUCGGUgccaccaacGGCGg- -3'
miRNA:   3'- -CGaa---GUUGgUGCAGCAGUCG---------UCGUac -5'
14499 3' -51.1 NC_003521.1 + 92848 0.66 0.998537
Target:  5'- cGCU--GACCAUGUCGUUccgccucccCAGCAUGa -3'
miRNA:   3'- -CGAagUUGGUGCAGCAGuc-------GUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 228020 0.66 0.998537
Target:  5'- --gUUGGCCACGUCuucggcauuGUCGGUGGCGUu -3'
miRNA:   3'- cgaAGUUGGUGCAG---------CAGUCGUCGUAc -5'
14499 3' -51.1 NC_003521.1 + 48307 0.66 0.998511
Target:  5'- --gUCuuCgACGUCGUCAGauucgagcaguacCAGCGUGg -3'
miRNA:   3'- cgaAGuuGgUGCAGCAGUC-------------GUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 72764 0.66 0.998248
Target:  5'- cGCgucUCGagcACC-CGcCGUCGGCGGCAc- -3'
miRNA:   3'- -CGa--AGU---UGGuGCaGCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 36953 0.66 0.998248
Target:  5'- ---cCGACgCugGUCGUC-GCAGCGg- -3'
miRNA:   3'- cgaaGUUG-GugCAGCAGuCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 238061 0.66 0.997913
Target:  5'- cCUUC-ACCucCGUCGUCccuuugcaguAGCAGCAg- -3'
miRNA:   3'- cGAAGuUGGu-GCAGCAG----------UCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 94943 0.66 0.997524
Target:  5'- cGCcggCGGCCuCGUCGUCGGCGccgcccgccGCcgGg -3'
miRNA:   3'- -CGaa-GUUGGuGCAGCAGUCGU---------CGuaC- -5'
14499 3' -51.1 NC_003521.1 + 62548 0.66 0.997524
Target:  5'- uCUUCGACCcgcaccgcACGUCG-CAauGCAGCAa- -3'
miRNA:   3'- cGAAGUUGG--------UGCAGCaGU--CGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 75369 0.66 0.997078
Target:  5'- cGCUcaacaucgUCAgggGCCACGUCGUgGuCAGCGUc -3'
miRNA:   3'- -CGA--------AGU---UGGUGCAGCAgUcGUCGUAc -5'
14499 3' -51.1 NC_003521.1 + 64175 0.66 0.997078
Target:  5'- uGCUggaggaGAUCACGcgacugCGUCAGCAGUAc- -3'
miRNA:   3'- -CGAag----UUGGUGCa-----GCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 118604 0.66 0.997078
Target:  5'- cGCcggCAcCCGCGcUCGcaGGCAGCAUGg -3'
miRNA:   3'- -CGaa-GUuGGUGC-AGCagUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 219700 0.66 0.997078
Target:  5'- --cUCuGgCGgGUCGUCGGCAGCGg- -3'
miRNA:   3'- cgaAGuUgGUgCAGCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 181116 0.66 0.997078
Target:  5'- aGC-UCGGCCACGgCG-CGGCAGUu-- -3'
miRNA:   3'- -CGaAGUUGGUGCaGCaGUCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 53851 0.66 0.997078
Target:  5'- cGCg-CGACgGCGUCcUCGGCcGGCGUGu -3'
miRNA:   3'- -CGaaGUUGgUGCAGcAGUCG-UCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 234810 0.66 0.997078
Target:  5'- gGCUccUCGGCCuCGUCGUCGG-GGUucGUGg -3'
miRNA:   3'- -CGA--AGUUGGuGCAGCAGUCgUCG--UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.