miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 24847 0.66 0.990251
Target:  5'- gGGCAUCaucuUCGCCGGcCACCucucGCa- -3'
miRNA:   3'- -CCGUAG----AGCGGCCuGUGGuacaUGcu -5'
14499 5' -54 NC_003521.1 + 212150 0.66 0.990251
Target:  5'- cGGCGUag-GUCGGGaACCAgagGUGCGAg -3'
miRNA:   3'- -CCGUAgagCGGCCUgUGGUa--CAUGCU- -5'
14499 5' -54 NC_003521.1 + 168115 0.66 0.990128
Target:  5'- aGGCGUggaUCGCCGaGgacgacaGCGCCGUGgguggACGGg -3'
miRNA:   3'- -CCGUAg--AGCGGC-C-------UGUGGUACa----UGCU- -5'
14499 5' -54 NC_003521.1 + 207622 0.66 0.990004
Target:  5'- gGGCggCUCGCCGGccuGCACCuucaccuuCGGu -3'
miRNA:   3'- -CCGuaGAGCGGCC---UGUGGuacau---GCU- -5'
14499 5' -54 NC_003521.1 + 141435 0.66 0.989494
Target:  5'- -cCGUCUCGCUGGAcCGCCucagagaggugcugcAggugGUGCGAa -3'
miRNA:   3'- ccGUAGAGCGGCCU-GUGG---------------Ua---CAUGCU- -5'
14499 5' -54 NC_003521.1 + 86524 0.66 0.989494
Target:  5'- cGCGUCggCcCCGGACGCCGUGccgccccgcuccacGCGAc -3'
miRNA:   3'- cCGUAGa-GcGGCCUGUGGUACa-------------UGCU- -5'
14499 5' -54 NC_003521.1 + 65988 0.66 0.988964
Target:  5'- uGGCca--CGCCGGACACCAaGU-CGc -3'
miRNA:   3'- -CCGuagaGCGGCCUGUGGUaCAuGCu -5'
14499 5' -54 NC_003521.1 + 37071 0.66 0.988964
Target:  5'- cGGCAgCU-GCUGGGCACCAUcuccaccucGUACu- -3'
miRNA:   3'- -CCGUaGAgCGGCCUGUGGUA---------CAUGcu -5'
14499 5' -54 NC_003521.1 + 152189 0.66 0.988964
Target:  5'- uGCGcCUCGCUGGGCugugACCcgG-ACGAg -3'
miRNA:   3'- cCGUaGAGCGGCCUG----UGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 76246 0.66 0.988964
Target:  5'- cGGUuacuGUCUCGCCaG-CACCGgugGCGAg -3'
miRNA:   3'- -CCG----UAGAGCGGcCuGUGGUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 44737 0.66 0.987549
Target:  5'- cGCAUUUCgugcuGCUGGACGCCGag-ACGGa -3'
miRNA:   3'- cCGUAGAG-----CGGCCUGUGGUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 169439 0.66 0.987549
Target:  5'- aGGCGgucCUCGaacagCGGGuCGCCGUGgACGAa -3'
miRNA:   3'- -CCGUa--GAGCg----GCCU-GUGGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 70692 0.66 0.987549
Target:  5'- cGGCGUCUgCGCCGcaagcugcgucGGCGCCugcgccggAUGUACc- -3'
miRNA:   3'- -CCGUAGA-GCGGC-----------CUGUGG--------UACAUGcu -5'
14499 5' -54 NC_003521.1 + 100237 0.66 0.987549
Target:  5'- aGCGUCUCGCCGGcCGCgAaauccucggGCGGc -3'
miRNA:   3'- cCGUAGAGCGGCCuGUGgUaca------UGCU- -5'
14499 5' -54 NC_003521.1 + 157596 0.66 0.985997
Target:  5'- uGGUcaagugCGCCgaGGGCACCGUGUACc- -3'
miRNA:   3'- -CCGuaga--GCGG--CCUGUGGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 218092 0.66 0.985997
Target:  5'- cGGCGg--CGCCGGugACgAUGaggGCGu -3'
miRNA:   3'- -CCGUagaGCGGCCugUGgUACa--UGCu -5'
14499 5' -54 NC_003521.1 + 222118 0.66 0.985834
Target:  5'- cGGCAgccacaGCCGGAUcgcgccgGCCAUG-GCGAa -3'
miRNA:   3'- -CCGUagag--CGGCCUG-------UGGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 198814 0.66 0.985834
Target:  5'- cGGCGUCU-GUCGuGcCGCCGUGUugcugcuGCGAc -3'
miRNA:   3'- -CCGUAGAgCGGC-CuGUGGUACA-------UGCU- -5'
14499 5' -54 NC_003521.1 + 86188 0.66 0.984302
Target:  5'- aGCGaCUCGCgGGcCACgGUGgagGCGAa -3'
miRNA:   3'- cCGUaGAGCGgCCuGUGgUACa--UGCU- -5'
14499 5' -54 NC_003521.1 + 115542 0.66 0.984302
Target:  5'- cGCggCUCGCCugacGGAgCGCCGUGcUGCGc -3'
miRNA:   3'- cCGuaGAGCGG----CCU-GUGGUAC-AUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.