miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 217618 0.67 0.757415
Target:  5'- gGCGUCuCGGCCGcCAucuccUCGGCGUGGu -3'
miRNA:   3'- aCGCGGcGCCGGCaGU-----GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 215135 0.68 0.683769
Target:  5'- aGgGCCGCcacgaaGGCCagcGUCACCagGACGUGGa -3'
miRNA:   3'- aCgCGGCG------CCGG---CAGUGG--CUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 214834 0.7 0.579291
Target:  5'- gGCGCUGCGGCUucaUCACCGuGCccGACg -3'
miRNA:   3'- aCGCGGCGCCGGc--AGUGGC-UGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 213738 0.69 0.636295
Target:  5'- gGCGCCGCaGaaG--GCCGugGUGGCg -3'
miRNA:   3'- aCGCGGCGcCggCagUGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 212847 0.72 0.461114
Target:  5'- cUGcCGCCGUGGCCGUgagCGCCG-CcUGGCg -3'
miRNA:   3'- -AC-GCGGCGCCGGCA---GUGGCuGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 212667 0.68 0.702548
Target:  5'- gGCGUCGCGGgCaugGUCGCCGcCGUcGCc -3'
miRNA:   3'- aCGCGGCGCCgG---CAGUGGCuGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 212503 0.66 0.808831
Target:  5'- gGCGguCCGCaGGCCG-CGCCGGgGUcGCu -3'
miRNA:   3'- aCGC--GGCG-CCGGCaGUGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 212003 0.68 0.706282
Target:  5'- gGCGCCGCaGacacgccagguacugGCCGUCGgUGACG-GGCu -3'
miRNA:   3'- aCGCGGCG-C---------------CGGCAGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 210959 0.68 0.645822
Target:  5'- aGCGCCaCGGCCuUCugCGucccggGCGUGAa -3'
miRNA:   3'- aCGCGGcGCCGGcAGugGC------UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 210889 0.7 0.541863
Target:  5'- cGuCGCCucgGUGGCCGUCGCCaGGCccuUGACg -3'
miRNA:   3'- aC-GCGG---CGCCGGCAGUGG-CUGc--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 209858 0.66 0.800568
Target:  5'- cUGCuGCUGCGuGCCGagCGCCuGGCuUGGCa -3'
miRNA:   3'- -ACG-CGGCGC-CGGCa-GUGG-CUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 209723 0.73 0.394213
Target:  5'- uUGCGCCGCguguaccGGCCGcCGCCGuCGUcGCu -3'
miRNA:   3'- -ACGCGGCG-------CCGGCaGUGGCuGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 209548 0.68 0.67432
Target:  5'- aUGCGCC-CGGCgGgguggCGgCGACgGUGGCg -3'
miRNA:   3'- -ACGCGGcGCCGgCa----GUgGCUG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 208728 0.69 0.60202
Target:  5'- cGCGCCGCcaaacgcauggcgcuGGCCGUgGCC-ACG-GGCc -3'
miRNA:   3'- aCGCGGCG---------------CCGGCAgUGGcUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 208522 0.7 0.551153
Target:  5'- gUGCGCCGCaGCUGUCuggcccauucgGCCGAgGUcACg -3'
miRNA:   3'- -ACGCGGCGcCGGCAG-----------UGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 207715 0.68 0.683769
Target:  5'- gGC-CCGCuacGCCGUCAUCGGC-UGGCu -3'
miRNA:   3'- aCGcGGCGc--CGGCAGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 207657 0.69 0.588742
Target:  5'- cGUGgaaCGUGGCCGagGCCGACGaGGCc -3'
miRNA:   3'- aCGCg--GCGCCGGCagUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 204817 0.67 0.721122
Target:  5'- gGgGCCGCcaccuCCGUCGCCGuCGcUGACc -3'
miRNA:   3'- aCgCGGCGcc---GGCAGUGGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 204754 0.68 0.693181
Target:  5'- gGCGCCGCcGCCGcccuguugugUCGgCGGCG-GGCu -3'
miRNA:   3'- aCGCGGCGcCGGC----------AGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 203308 0.67 0.730313
Target:  5'- -uUGCCGuuGCUGUCGCUGaucugguacaGCGUGGCg -3'
miRNA:   3'- acGCGGCgcCGGCAGUGGC----------UGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.