miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 90568 0.73 0.410953
Target:  5'- gGCcgGCCGCGGUgcagGCCGACGUGACg -3'
miRNA:   3'- aCG--CGGCGCCGgcagUGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 125406 0.73 0.387175
Target:  5'- cGCGCCGCGGCgcugaGUCcggagGCCGugGcGGCc -3'
miRNA:   3'- aCGCGGCGCCGg----CAG-----UGGCugCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 89614 0.75 0.30806
Target:  5'- gGCGCCGCGGU---CACCGugGUGGu -3'
miRNA:   3'- aCGCGGCGCCGgcaGUGGCugCACUg -5'
14503 5' -61.6 NC_003521.1 + 171653 0.76 0.252986
Target:  5'- cGCGCCGCGGCgggcgucgggagCGUCGgCGGCaUGACg -3'
miRNA:   3'- aCGCGGCGCCG------------GCAGUgGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 95098 0.71 0.487378
Target:  5'- gGCGCCuugaGCGGCCG-CGCgCGcuugaGCGUGGCc -3'
miRNA:   3'- aCGCGG----CGCCGGCaGUG-GC-----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 235295 0.72 0.452526
Target:  5'- cGCGCCgGCuGCCGUCACCGuCGcuGCu -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCuGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 167741 0.73 0.378686
Target:  5'- gGCGCUGCgguGGCCGgcggagcugagggUCACCGACaUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGC-------------AGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 169550 0.77 0.247393
Target:  5'- cGUGCCGCGGCCcccgccucCGCCGAUGUuGGCg -3'
miRNA:   3'- aCGCGGCGCCGGca------GUGGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 104017 0.72 0.452526
Target:  5'- -aCGCCGgGGUCGUCGgCGggcaGCGUGACc -3'
miRNA:   3'- acGCGGCgCCGGCAGUgGC----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 22185 0.77 0.226041
Target:  5'- gGCGCCGcCGGCCGUgGCCGcuuaccgccgcGCGcUGGCg -3'
miRNA:   3'- aCGCGGC-GCCGGCAgUGGC-----------UGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 177766 0.73 0.379452
Target:  5'- gGgGUCGCGGUCGUCgccaggGCCGACGgGGCc -3'
miRNA:   3'- aCgCGGCGCCGGCAG------UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 181460 0.73 0.419078
Target:  5'- gGCGuCCaGCGGCUGgcgCGCCGccugcaGCGUGGCg -3'
miRNA:   3'- aCGC-GG-CGCCGGCa--GUGGC------UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 172402 0.74 0.335329
Target:  5'- gGCGCCgGCGgaGCCGUCGCCG-CGgGACc -3'
miRNA:   3'- aCGCGG-CGC--CGGCAGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 187640 0.75 0.314715
Target:  5'- cGCGCCGCuGGCCaucuUCAUCGGCGagGGCg -3'
miRNA:   3'- aCGCGGCG-CCGGc---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 127068 0.75 0.288742
Target:  5'- gGUGCCGCGGCaggGcCACCGACGagaGGCg -3'
miRNA:   3'- aCGCGGCGCCGg--CaGUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 135226 0.76 0.2764
Target:  5'- aGCGCCugaGCGGCUG-CGCCGGCGgcggcGACg -3'
miRNA:   3'- aCGCGG---CGCCGGCaGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 110533 0.71 0.505273
Target:  5'- gGCGCCGCGGCC-UCGCCcAgGUaGCc -3'
miRNA:   3'- aCGCGGCGCCGGcAGUGGcUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 178507 0.71 0.487378
Target:  5'- aUGCGUCGCGGUaccuCGUCGCCcauccgguaGACG-GGCa -3'
miRNA:   3'- -ACGCGGCGCCG----GCAGUGG---------CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 49589 0.72 0.469787
Target:  5'- aGUGCCGaggaaGG-CGUCACCGGCGcugggGACg -3'
miRNA:   3'- aCGCGGCg----CCgGCAGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 39896 0.72 0.461114
Target:  5'- gGCG-UGCGGUCGUC-CCGGCG-GGCg -3'
miRNA:   3'- aCGCgGCGCCGGCAGuGGCUGCaCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.