Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14514 | 3' | -59.5 | NC_003521.1 | + | 118013 | 0.66 | 0.878203 |
Target: 5'- cGGCGGcGUGucgcuGCCGCGGGacucggUGCUGGg -3' miRNA: 3'- cUCGCUcCACc----CGGCGCUCa-----ACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 162248 | 0.66 | 0.878203 |
Target: 5'- uGGCGGGGUGGGCgucaaCGgGGG-UGCg-- -3' miRNA: 3'- cUCGCUCCACCCG-----GCgCUCaACGacc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 13608 | 0.66 | 0.87548 |
Target: 5'- cGAGUGGaauGG-GGGgCGCGAGgcuauaaacuggGCUGGg -3' miRNA: 3'- -CUCGCU---CCaCCCgGCGCUCaa----------CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 88648 | 0.66 | 0.871337 |
Target: 5'- cAGCGAGGcgcagaGGGCCGCcaGGUcGgUGGg -3' miRNA: 3'- cUCGCUCCa-----CCCGGCGc-UCAaCgACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 49974 | 0.66 | 0.871337 |
Target: 5'- cGAGCGgcGGGUGGGUCGa-GGgaGCcGGg -3' miRNA: 3'- -CUCGC--UCCACCCGGCgcUCaaCGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 128263 | 0.66 | 0.871337 |
Target: 5'- aGGcCGuGGUGGGCaGCGcGUUGC-GGa -3' miRNA: 3'- cUC-GCuCCACCCGgCGCuCAACGaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 45437 | 0.66 | 0.871337 |
Target: 5'- cGGCGcGGUcauGGCCucgccgugGCGuGUUGCUGGa -3' miRNA: 3'- cUCGCuCCAc--CCGG--------CGCuCAACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 196812 | 0.66 | 0.871337 |
Target: 5'- uGGGCGAGGgcaGGCCGUG-GUUGagcaGGc -3' miRNA: 3'- -CUCGCUCCac-CCGGCGCuCAACga--CC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 84758 | 0.66 | 0.871337 |
Target: 5'- cGGGCGcGGc-GGCgGCGAcGUUGUUGGc -3' miRNA: 3'- -CUCGCuCCacCCGgCGCU-CAACGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 18258 | 0.66 | 0.87064 |
Target: 5'- cGAGCGGuGGUGGGgaccugcCCGCGAcg-GgaGGg -3' miRNA: 3'- -CUCGCU-CCACCC-------GGCGCUcaaCgaCC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 77040 | 0.66 | 0.864279 |
Target: 5'- cGGCGGuGGUGGcGCCGCuaccGUUGUUGc -3' miRNA: 3'- cUCGCU-CCACC-CGGCGcu--CAACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 190531 | 0.66 | 0.864279 |
Target: 5'- gGAGCGAGGUGcGGCgGC-AGcaGCggcGGa -3' miRNA: 3'- -CUCGCUCCAC-CCGgCGcUCaaCGa--CC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 148325 | 0.66 | 0.857032 |
Target: 5'- gGGGUGAGGUGGcggaccacGcCCG-GAGagGCUGGg -3' miRNA: 3'- -CUCGCUCCACC--------C-GGCgCUCaaCGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 232546 | 0.66 | 0.857032 |
Target: 5'- uGGGCGAGGUGGccuacuaCGgGGGcUGCUGu -3' miRNA: 3'- -CUCGCUCCACCcg-----GCgCUCaACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 187661 | 0.66 | 0.857032 |
Target: 5'- cGGCGAGG-GcGGCCGCGuGUacUGUUa- -3' miRNA: 3'- cUCGCUCCaC-CCGGCGCuCA--ACGAcc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 155386 | 0.66 | 0.857032 |
Target: 5'- cGGCGcGGacgacGaGGCCgGCGGGggGCUGGg -3' miRNA: 3'- cUCGCuCCa----C-CCGG-CGCUCaaCGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 53950 | 0.66 | 0.849603 |
Target: 5'- -cGCuGAGcUGGGCCGaCGAGccgUGCUGc -3' miRNA: 3'- cuCG-CUCcACCCGGC-GCUCa--ACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 35391 | 0.66 | 0.84885 |
Target: 5'- cGGCGAGGacgcGGGCCGCGcgacagaAGgccuucUGCUGu -3' miRNA: 3'- cUCGCUCCa---CCCGGCGC-------UCa-----ACGACc -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 148368 | 0.66 | 0.841996 |
Target: 5'- cGAGCGGGcaagccgagcGGGgUGCGGGgagGCUGGg -3' miRNA: 3'- -CUCGCUCca--------CCCgGCGCUCaa-CGACC- -5' |
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14514 | 3' | -59.5 | NC_003521.1 | + | 168456 | 0.67 | 0.834217 |
Target: 5'- aGAGCGuGaUGGGgCGCuGGUgGCUGGu -3' miRNA: 3'- -CUCGCuCcACCCgGCGcUCAaCGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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