miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 118013 0.66 0.878203
Target:  5'- cGGCGGcGUGucgcuGCCGCGGGacucggUGCUGGg -3'
miRNA:   3'- cUCGCUcCACc----CGGCGCUCa-----ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 162248 0.66 0.878203
Target:  5'- uGGCGGGGUGGGCgucaaCGgGGG-UGCg-- -3'
miRNA:   3'- cUCGCUCCACCCG-----GCgCUCaACGacc -5'
14514 3' -59.5 NC_003521.1 + 13608 0.66 0.87548
Target:  5'- cGAGUGGaauGG-GGGgCGCGAGgcuauaaacuggGCUGGg -3'
miRNA:   3'- -CUCGCU---CCaCCCgGCGCUCaa----------CGACC- -5'
14514 3' -59.5 NC_003521.1 + 88648 0.66 0.871337
Target:  5'- cAGCGAGGcgcagaGGGCCGCcaGGUcGgUGGg -3'
miRNA:   3'- cUCGCUCCa-----CCCGGCGc-UCAaCgACC- -5'
14514 3' -59.5 NC_003521.1 + 49974 0.66 0.871337
Target:  5'- cGAGCGgcGGGUGGGUCGa-GGgaGCcGGg -3'
miRNA:   3'- -CUCGC--UCCACCCGGCgcUCaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 128263 0.66 0.871337
Target:  5'- aGGcCGuGGUGGGCaGCGcGUUGC-GGa -3'
miRNA:   3'- cUC-GCuCCACCCGgCGCuCAACGaCC- -5'
14514 3' -59.5 NC_003521.1 + 45437 0.66 0.871337
Target:  5'- cGGCGcGGUcauGGCCucgccgugGCGuGUUGCUGGa -3'
miRNA:   3'- cUCGCuCCAc--CCGG--------CGCuCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 196812 0.66 0.871337
Target:  5'- uGGGCGAGGgcaGGCCGUG-GUUGagcaGGc -3'
miRNA:   3'- -CUCGCUCCac-CCGGCGCuCAACga--CC- -5'
14514 3' -59.5 NC_003521.1 + 84758 0.66 0.871337
Target:  5'- cGGGCGcGGc-GGCgGCGAcGUUGUUGGc -3'
miRNA:   3'- -CUCGCuCCacCCGgCGCU-CAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 18258 0.66 0.87064
Target:  5'- cGAGCGGuGGUGGGgaccugcCCGCGAcg-GgaGGg -3'
miRNA:   3'- -CUCGCU-CCACCC-------GGCGCUcaaCgaCC- -5'
14514 3' -59.5 NC_003521.1 + 77040 0.66 0.864279
Target:  5'- cGGCGGuGGUGGcGCCGCuaccGUUGUUGc -3'
miRNA:   3'- cUCGCU-CCACC-CGGCGcu--CAACGACc -5'
14514 3' -59.5 NC_003521.1 + 190531 0.66 0.864279
Target:  5'- gGAGCGAGGUGcGGCgGC-AGcaGCggcGGa -3'
miRNA:   3'- -CUCGCUCCAC-CCGgCGcUCaaCGa--CC- -5'
14514 3' -59.5 NC_003521.1 + 148325 0.66 0.857032
Target:  5'- gGGGUGAGGUGGcggaccacGcCCG-GAGagGCUGGg -3'
miRNA:   3'- -CUCGCUCCACC--------C-GGCgCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 232546 0.66 0.857032
Target:  5'- uGGGCGAGGUGGccuacuaCGgGGGcUGCUGu -3'
miRNA:   3'- -CUCGCUCCACCcg-----GCgCUCaACGACc -5'
14514 3' -59.5 NC_003521.1 + 187661 0.66 0.857032
Target:  5'- cGGCGAGG-GcGGCCGCGuGUacUGUUa- -3'
miRNA:   3'- cUCGCUCCaC-CCGGCGCuCA--ACGAcc -5'
14514 3' -59.5 NC_003521.1 + 155386 0.66 0.857032
Target:  5'- cGGCGcGGacgacGaGGCCgGCGGGggGCUGGg -3'
miRNA:   3'- cUCGCuCCa----C-CCGG-CGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 53950 0.66 0.849603
Target:  5'- -cGCuGAGcUGGGCCGaCGAGccgUGCUGc -3'
miRNA:   3'- cuCG-CUCcACCCGGC-GCUCa--ACGACc -5'
14514 3' -59.5 NC_003521.1 + 35391 0.66 0.84885
Target:  5'- cGGCGAGGacgcGGGCCGCGcgacagaAGgccuucUGCUGu -3'
miRNA:   3'- cUCGCUCCa---CCCGGCGC-------UCa-----ACGACc -5'
14514 3' -59.5 NC_003521.1 + 148368 0.66 0.841996
Target:  5'- cGAGCGGGcaagccgagcGGGgUGCGGGgagGCUGGg -3'
miRNA:   3'- -CUCGCUCca--------CCCgGCGCUCaa-CGACC- -5'
14514 3' -59.5 NC_003521.1 + 168456 0.67 0.834217
Target:  5'- aGAGCGuGaUGGGgCGCuGGUgGCUGGu -3'
miRNA:   3'- -CUCGCuCcACCCgGCGcUCAaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.