miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 215954 0.66 0.945954
Target:  5'- -cGCACCAUGagGACCUGcUGCGa--GAg -3'
miRNA:   3'- guCGUGGUACa-CUGGGC-ACGCgugCU- -5'
14516 3' -56.9 NC_003521.1 + 87984 0.66 0.945954
Target:  5'- gAGgACUcgGUGaAUCUGgggGCGCGCGAc -3'
miRNA:   3'- gUCgUGGuaCAC-UGGGCa--CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 80123 0.66 0.945954
Target:  5'- gAGCGCCcuuGUGUuuuugcGGCCgGUGCuGCGCGu -3'
miRNA:   3'- gUCGUGG---UACA------CUGGgCACG-CGUGCu -5'
14516 3' -56.9 NC_003521.1 + 179522 0.66 0.9416
Target:  5'- aCGGuCugCAUGUccuugGACagGUGCGCGCGGc -3'
miRNA:   3'- -GUC-GugGUACA-----CUGggCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 152738 0.66 0.9416
Target:  5'- --uCGCCGaGUGGCCCGUG-GuCACGGg -3'
miRNA:   3'- gucGUGGUaCACUGGGCACgC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 212423 0.66 0.9416
Target:  5'- uCAGCAggcCCAUGaUGGCCag-GCGuCGCGAc -3'
miRNA:   3'- -GUCGU---GGUAC-ACUGGgcaCGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 167710 0.66 0.940703
Target:  5'- gCAGCACCuccGUGGCCaCGguggauugcgugGCGCuGCGGu -3'
miRNA:   3'- -GUCGUGGua-CACUGG-GCa-----------CGCG-UGCU- -5'
14516 3' -56.9 NC_003521.1 + 198694 0.66 0.937025
Target:  5'- cCGGCACguUGaaagucUGACCgCGUuugacGCGCGCGGg -3'
miRNA:   3'- -GUCGUGguAC------ACUGG-GCA-----CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 67501 0.66 0.937025
Target:  5'- -cGCACCcUGUGGCCCcagGUGuCGC-UGAg -3'
miRNA:   3'- guCGUGGuACACUGGG---CAC-GCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 102027 0.66 0.932227
Target:  5'- gAGCACC-UG-GGCCaCG-GCGCGCa- -3'
miRNA:   3'- gUCGUGGuACaCUGG-GCaCGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 223165 0.66 0.932227
Target:  5'- gGGcCACCGUgGUGcCCCGgugcugGCGUACGu -3'
miRNA:   3'- gUC-GUGGUA-CACuGGGCa-----CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 212639 0.66 0.932227
Target:  5'- gGGCgacuugGCCAUGcGACCCGaagaggGCGuCGCGGg -3'
miRNA:   3'- gUCG------UGGUACaCUGGGCa-----CGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 17429 0.66 0.932227
Target:  5'- gGGCGCCAcacGGCCCGcgucgggGCGcCGCGAu -3'
miRNA:   3'- gUCGUGGUacaCUGGGCa------CGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 169534 0.66 0.932227
Target:  5'- uGGUGCCccaggGGCCCGUGC-CGCGGc -3'
miRNA:   3'- gUCGUGGuaca-CUGGGCACGcGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 27109 0.66 0.932227
Target:  5'- aCGGCGCgCA---GGCCgGUGCGgGCGAa -3'
miRNA:   3'- -GUCGUG-GUacaCUGGgCACGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 225130 0.66 0.932227
Target:  5'- aCAGCACCuggucgacGUGguugcgGACCCaGUcGCGCACc- -3'
miRNA:   3'- -GUCGUGG--------UACa-----CUGGG-CA-CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 145842 0.66 0.932227
Target:  5'- aCGGCACUAuuaacgcgucucUG-GGCCCGgcgGCGgGCGGc -3'
miRNA:   3'- -GUCGUGGU------------ACaCUGGGCa--CGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 205755 0.66 0.927206
Target:  5'- gAGCGCCcgGaggaaGACCUGUGUgguggcgccGCACGGc -3'
miRNA:   3'- gUCGUGGuaCa----CUGGGCACG---------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 118743 0.66 0.927206
Target:  5'- gGGCugCAgguugcugGUGAgucggcggCCGUGCGCACGu -3'
miRNA:   3'- gUCGugGUa-------CACUg-------GGCACGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 102853 0.66 0.927206
Target:  5'- gGGCGCcCGUGgcguaggucUGGgCCGUGCGUAgCGAg -3'
miRNA:   3'- gUCGUG-GUAC---------ACUgGGCACGCGU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.