Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14516 | 3' | -56.9 | NC_003521.1 | + | 194794 | 0.67 | 0.904889 |
Target: 5'- -uGcCGCCAUGUGGCCCuucacgGUGCuGCugGc -3' miRNA: 3'- guC-GUGGUACACUGGG------CACG-CGugCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 194276 | 0.68 | 0.857546 |
Target: 5'- uCAGCACCcgGcgcgaGGCCCugGUGCGcCugGAg -3' miRNA: 3'- -GUCGUGGuaCa----CUGGG--CACGC-GugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 179522 | 0.66 | 0.9416 |
Target: 5'- aCGGuCugCAUGUccuugGACagGUGCGCGCGGc -3' miRNA: 3'- -GUC-GugGUACA-----CUGggCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 172088 | 0.69 | 0.80951 |
Target: 5'- gCGGCGgCGUGaUGAagUCCGUGCGgGCGGc -3' miRNA: 3'- -GUCGUgGUAC-ACU--GGGCACGCgUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 169534 | 0.66 | 0.932227 |
Target: 5'- uGGUGCCccaggGGCCCGUGC-CGCGGc -3' miRNA: 3'- gUCGUGGuaca-CUGGGCACGcGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 167710 | 0.66 | 0.940703 |
Target: 5'- gCAGCACCuccGUGGCCaCGguggauugcgugGCGCuGCGGu -3' miRNA: 3'- -GUCGUGGua-CACUGG-GCa-----------CGCG-UGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 166673 | 0.67 | 0.898758 |
Target: 5'- gCGGCACC-UG-GGcCCCGUGgCGCGCc- -3' miRNA: 3'- -GUCGUGGuACaCU-GGGCAC-GCGUGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 166289 | 0.69 | 0.84223 |
Target: 5'- gCGGCugguCCGcGUGGCCuCGuUGCGUACGGc -3' miRNA: 3'- -GUCGu---GGUaCACUGG-GC-ACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 162727 | 0.7 | 0.765286 |
Target: 5'- gGGCugCGUgGUGGucgacauguacCCCGUGUGCAUGGc -3' miRNA: 3'- gUCGugGUA-CACU-----------GGGCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 162409 | 0.7 | 0.783365 |
Target: 5'- uCGGUACC-UGUGAuCCCGUGgGCGaggcCGAc -3' miRNA: 3'- -GUCGUGGuACACU-GGGCACgCGU----GCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 155619 | 0.68 | 0.864921 |
Target: 5'- gCGGCGCCggGUGACgCaGUGuCGUACGc -3' miRNA: 3'- -GUCGUGGuaCACUGgG-CAC-GCGUGCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 155271 | 0.67 | 0.898758 |
Target: 5'- gCGGCGCCuca-GGCCCGU-CGCugGGc -3' miRNA: 3'- -GUCGUGGuacaCUGGGCAcGCGugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 153546 | 0.7 | 0.75515 |
Target: 5'- -cGCACCucg-GGCCCGUuggccacGCGCACGGc -3' miRNA: 3'- guCGUGGuacaCUGGGCA-------CGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 152738 | 0.66 | 0.9416 |
Target: 5'- --uCGCCGaGUGGCCCGUG-GuCACGGg -3' miRNA: 3'- gucGUGGUaCACUGGGCACgC-GUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 152189 | 0.7 | 0.790457 |
Target: 5'- -uGCGCCucgcugggcUGUGACCCGgacgaggucacgGCGCACGu -3' miRNA: 3'- guCGUGGu--------ACACUGGGCa-----------CGCGUGCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 151058 | 0.73 | 0.590531 |
Target: 5'- aAGCGCCGUc---CCUGUGCGCGCGGg -3' miRNA: 3'- gUCGUGGUAcacuGGGCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 148935 | 0.75 | 0.513218 |
Target: 5'- gCAGCGCCGUGcUGGCgCGUGUgcuGCugGAg -3' miRNA: 3'- -GUCGUGGUAC-ACUGgGCACG---CGugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 148443 | 0.72 | 0.68921 |
Target: 5'- gCGGCuCCAgggGUGGCCgGUGCGUGCuGAu -3' miRNA: 3'- -GUCGuGGUa--CACUGGgCACGCGUG-CU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 147709 | 1.09 | 0.003987 |
Target: 5'- cCAGCACCAUGUGACCCGUGCGCACGAa -3' miRNA: 3'- -GUCGUGGUACACUGGGCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 145842 | 0.66 | 0.932227 |
Target: 5'- aCGGCACUAuuaacgcgucucUG-GGCCCGgcgGCGgGCGGc -3' miRNA: 3'- -GUCGUGGU------------ACaCUGGGCa--CGCgUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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