Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14516 | 3' | -56.9 | NC_003521.1 | + | 46194 | 0.68 | 0.864921 |
Target: 5'- -uGCACgGUGcugGugUCGUGCGCGCuGAu -3' miRNA: 3'- guCGUGgUACa--CugGGCACGCGUG-CU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 92225 | 0.68 | 0.84998 |
Target: 5'- gAGCGCUGUGagGGCCCGacggGCGCcgcGCGGu -3' miRNA: 3'- gUCGUGGUACa-CUGGGCa---CGCG---UGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 129591 | 0.7 | 0.783365 |
Target: 5'- gGGCGCgAcuUGUGACCCGUGuCGCcCa- -3' miRNA: 3'- gUCGUGgU--ACACUGGGCAC-GCGuGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 86811 | 0.73 | 0.620148 |
Target: 5'- -uGCACCAggugcUGcgGACCCGUGCGUGCu- -3' miRNA: 3'- guCGUGGU-----ACa-CUGGGCACGCGUGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 87268 | 0.67 | 0.914243 |
Target: 5'- -uGCGCCGUGcgcguggccaacgGGCCCGagGUGCGCGu -3' miRNA: 3'- guCGUGGUACa------------CUGGGCa-CGCGUGCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 200478 | 0.67 | 0.89241 |
Target: 5'- gCAGCGCCGUGauccUGGCCaaacuGgcgGCGCGCa- -3' miRNA: 3'- -GUCGUGGUAC----ACUGGg----Ca--CGCGUGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 204001 | 0.69 | 0.84223 |
Target: 5'- gCAGCGCCGgcccGUGGCgCGUGauCACGGc -3' miRNA: 3'- -GUCGUGGUa---CACUGgGCACgcGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 151058 | 0.73 | 0.590531 |
Target: 5'- aAGCGCCGUc---CCUGUGCGCGCGGg -3' miRNA: 3'- gUCGUGGUAcacuGGGCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 205361 | 0.68 | 0.885848 |
Target: 5'- -uGCGCCGUGcacGACCUGcGCgGCAUGAu -3' miRNA: 3'- guCGUGGUACa--CUGGGCaCG-CGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 103149 | 0.73 | 0.580706 |
Target: 5'- gCAGCACCAggcgGAUCuCGUcGCGCACGGc -3' miRNA: 3'- -GUCGUGGUaca-CUGG-GCA-CGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 115558 | 0.68 | 0.849214 |
Target: 5'- gAGCGCCGUGcugcgcggacguUGAucucgccCCCGUGCGCGuCGu -3' miRNA: 3'- gUCGUGGUAC------------ACU-------GGGCACGCGU-GCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 155619 | 0.68 | 0.864921 |
Target: 5'- gCGGCGCCggGUGACgCaGUGuCGUACGc -3' miRNA: 3'- -GUCGUGGuaCACUGgG-CAC-GCGUGCu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 172088 | 0.69 | 0.80951 |
Target: 5'- gCGGCGgCGUGaUGAagUCCGUGCGgGCGGc -3' miRNA: 3'- -GUCGUgGUAC-ACU--GGGCACGCgUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 162409 | 0.7 | 0.783365 |
Target: 5'- uCGGUACC-UGUGAuCCCGUGgGCGaggcCGAc -3' miRNA: 3'- -GUCGUGGuACACU-GGGCACgCGU----GCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 208870 | 0.71 | 0.727867 |
Target: 5'- aCGGCACCAUGUG-CCUGUuccuggaccccGaggaGCGCGAg -3' miRNA: 3'- -GUCGUGGUACACuGGGCA-----------Cg---CGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 23395 | 0.72 | 0.679415 |
Target: 5'- gAGCACCGUGUu-CCUGUGCuGCACc- -3' miRNA: 3'- gUCGUGGUACAcuGGGCACG-CGUGcu -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 205755 | 0.66 | 0.927206 |
Target: 5'- gAGCGCCcgGaggaaGACCUGUGUgguggcgccGCACGGc -3' miRNA: 3'- gUCGUGGuaCa----CUGGGCACG---------CGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 122047 | 0.67 | 0.916493 |
Target: 5'- gCAGCGagAUGcagGGCgaCGUGCGCACGGc -3' miRNA: 3'- -GUCGUggUACa--CUGg-GCACGCGUGCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 155271 | 0.67 | 0.898758 |
Target: 5'- gCGGCGCCuca-GGCCCGU-CGCugGGc -3' miRNA: 3'- -GUCGUGGuacaCUGGGCAcGCGugCU- -5' |
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14516 | 3' | -56.9 | NC_003521.1 | + | 216350 | 0.67 | 0.89241 |
Target: 5'- uGGcCACCgaggGUGUGagGCCCGUGgucCGCGCGGa -3' miRNA: 3'- gUC-GUGG----UACAC--UGGGCAC---GCGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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