miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 137614 0.66 0.980231
Target:  5'- cCGCGCGCuGGaCGCCuaccgcucGcgCAUCGCGg -3'
miRNA:   3'- -GUGCGCG-CC-GUGGua------CuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 110526 0.66 0.980231
Target:  5'- gAUGCGCGGCGCCGcGG-CcUCGCc- -3'
miRNA:   3'- gUGCGCGCCGUGGUaCUaGuAGUGca -5'
14520 3' -54.8 NC_003521.1 + 152055 0.66 0.980231
Target:  5'- aCACGCGgGGUAUCGUGGacuucUCGgaggacCACGg -3'
miRNA:   3'- -GUGCGCgCCGUGGUACU-----AGUa-----GUGCa -5'
14520 3' -54.8 NC_003521.1 + 97552 0.66 0.980231
Target:  5'- aCAUGCGCGGguCgCA-GGUCAggcCGCGg -3'
miRNA:   3'- -GUGCGCGCCguG-GUaCUAGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 118212 0.66 0.980231
Target:  5'- aGCGCGCGGCcGCCgccgucgccgggGUGGUCAaugccucgugUCGgGUg -3'
miRNA:   3'- gUGCGCGCCG-UGG------------UACUAGU----------AGUgCA- -5'
14520 3' -54.8 NC_003521.1 + 225504 0.66 0.980018
Target:  5'- aGCGCGCugaucacccgcucGGCGCCGUcGcgCGUCgACGa -3'
miRNA:   3'- gUGCGCG-------------CCGUGGUA-CuaGUAG-UGCa -5'
14520 3' -54.8 NC_003521.1 + 92995 0.66 0.978029
Target:  5'- gGCuGCaCGGCACCGUGcaguUCcgCACGa -3'
miRNA:   3'- gUG-CGcGCCGUGGUACu---AGuaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 207599 0.66 0.978029
Target:  5'- aACGC-CGGCugCAaGAUcCGUCugGg -3'
miRNA:   3'- gUGCGcGCCGugGUaCUA-GUAGugCa -5'
14520 3' -54.8 NC_003521.1 + 172224 0.66 0.978029
Target:  5'- aCGgGgGUGGCACCGuguaUGAUCAUauuGCGg -3'
miRNA:   3'- -GUgCgCGCCGUGGU----ACUAGUAg--UGCa -5'
14520 3' -54.8 NC_003521.1 + 61439 0.66 0.978029
Target:  5'- aGCGaGCGGCugCA-GGUCAUC-CGc -3'
miRNA:   3'- gUGCgCGCCGugGUaCUAGUAGuGCa -5'
14520 3' -54.8 NC_003521.1 + 168084 0.66 0.977568
Target:  5'- --aGCGCGGCACCAccGGUCGgaugcccuccaaCACGc -3'
miRNA:   3'- gugCGCGCCGUGGUa-CUAGUa-----------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 54025 0.66 0.976624
Target:  5'- cCACGcCGUGGCGCCugaaAcauguggacugcgguUGGUCGUCGCa- -3'
miRNA:   3'- -GUGC-GCGCCGUGG----U---------------ACUAGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 218033 0.66 0.975652
Target:  5'- uCACGCGCGGauaGCUA----CGUCACGa -3'
miRNA:   3'- -GUGCGCGCCg--UGGUacuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 151302 0.66 0.975652
Target:  5'- gACGCGCGGUuuagguauguaaACCGUGGgguuUCugGg -3'
miRNA:   3'- gUGCGCGCCG------------UGGUACUagu-AGugCa -5'
14520 3' -54.8 NC_003521.1 + 127385 0.66 0.975652
Target:  5'- -uCGCGCGcGUACCA-GggCGUCAgGUa -3'
miRNA:   3'- guGCGCGC-CGUGGUaCuaGUAGUgCA- -5'
14520 3' -54.8 NC_003521.1 + 132445 0.66 0.975652
Target:  5'- aGCGUGCGGCGCCugucuggccuuAUGGugcuUCGUCcUGUg -3'
miRNA:   3'- gUGCGCGCCGUGG-----------UACU----AGUAGuGCA- -5'
14520 3' -54.8 NC_003521.1 + 123957 0.66 0.975652
Target:  5'- cCGCGCcacuGCGcGCGCa--GGUCGUCGCGg -3'
miRNA:   3'- -GUGCG----CGC-CGUGguaCUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 220145 0.66 0.975404
Target:  5'- gGCcCGUGaaggugaugaacaGCGCCAcGGUCAUCACGUa -3'
miRNA:   3'- gUGcGCGC-------------CGUGGUaCUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 20645 0.66 0.974138
Target:  5'- cCGCGCGCuggugGGCGCCuacGUGAugaccguggcgcuguUCAUCACc- -3'
miRNA:   3'- -GUGCGCG-----CCGUGG---UACU---------------AGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 91028 0.66 0.973091
Target:  5'- gCGCGUGCGccGCACCGUG-UCG--GCGUg -3'
miRNA:   3'- -GUGCGCGC--CGUGGUACuAGUagUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.