Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14520 | 3' | -54.8 | NC_003521.1 | + | 137614 | 0.66 | 0.980231 |
Target: 5'- cCGCGCGCuGGaCGCCuaccgcucGcgCAUCGCGg -3' miRNA: 3'- -GUGCGCG-CC-GUGGua------CuaGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 97552 | 0.66 | 0.980231 |
Target: 5'- aCAUGCGCGGguCgCA-GGUCAggcCGCGg -3' miRNA: 3'- -GUGCGCGCCguG-GUaCUAGUa--GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 152055 | 0.66 | 0.980231 |
Target: 5'- aCACGCGgGGUAUCGUGGacuucUCGgaggacCACGg -3' miRNA: 3'- -GUGCGCgCCGUGGUACU-----AGUa-----GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 118212 | 0.66 | 0.980231 |
Target: 5'- aGCGCGCGGCcGCCgccgucgccgggGUGGUCAaugccucgugUCGgGUg -3' miRNA: 3'- gUGCGCGCCG-UGG------------UACUAGU----------AGUgCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 110526 | 0.66 | 0.980231 |
Target: 5'- gAUGCGCGGCGCCGcGG-CcUCGCc- -3' miRNA: 3'- gUGCGCGCCGUGGUaCUaGuAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 225504 | 0.66 | 0.980018 |
Target: 5'- aGCGCGCugaucacccgcucGGCGCCGUcGcgCGUCgACGa -3' miRNA: 3'- gUGCGCG-------------CCGUGGUA-CuaGUAG-UGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 61439 | 0.66 | 0.978029 |
Target: 5'- aGCGaGCGGCugCA-GGUCAUC-CGc -3' miRNA: 3'- gUGCgCGCCGugGUaCUAGUAGuGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 172224 | 0.66 | 0.978029 |
Target: 5'- aCGgGgGUGGCACCGuguaUGAUCAUauuGCGg -3' miRNA: 3'- -GUgCgCGCCGUGGU----ACUAGUAg--UGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 92995 | 0.66 | 0.978029 |
Target: 5'- gGCuGCaCGGCACCGUGcaguUCcgCACGa -3' miRNA: 3'- gUG-CGcGCCGUGGUACu---AGuaGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 207599 | 0.66 | 0.978029 |
Target: 5'- aACGC-CGGCugCAaGAUcCGUCugGg -3' miRNA: 3'- gUGCGcGCCGugGUaCUA-GUAGugCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 168084 | 0.66 | 0.977568 |
Target: 5'- --aGCGCGGCACCAccGGUCGgaugcccuccaaCACGc -3' miRNA: 3'- gugCGCGCCGUGGUa-CUAGUa-----------GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 54025 | 0.66 | 0.976624 |
Target: 5'- cCACGcCGUGGCGCCugaaAcauguggacugcgguUGGUCGUCGCa- -3' miRNA: 3'- -GUGC-GCGCCGUGG----U---------------ACUAGUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 218033 | 0.66 | 0.975652 |
Target: 5'- uCACGCGCGGauaGCUA----CGUCACGa -3' miRNA: 3'- -GUGCGCGCCg--UGGUacuaGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 151302 | 0.66 | 0.975652 |
Target: 5'- gACGCGCGGUuuagguauguaaACCGUGGgguuUCugGg -3' miRNA: 3'- gUGCGCGCCG------------UGGUACUagu-AGugCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 127385 | 0.66 | 0.975652 |
Target: 5'- -uCGCGCGcGUACCA-GggCGUCAgGUa -3' miRNA: 3'- guGCGCGC-CGUGGUaCuaGUAGUgCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 132445 | 0.66 | 0.975652 |
Target: 5'- aGCGUGCGGCGCCugucuggccuuAUGGugcuUCGUCcUGUg -3' miRNA: 3'- gUGCGCGCCGUGG-----------UACU----AGUAGuGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 123957 | 0.66 | 0.975652 |
Target: 5'- cCGCGCcacuGCGcGCGCa--GGUCGUCGCGg -3' miRNA: 3'- -GUGCG----CGC-CGUGguaCUAGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 220145 | 0.66 | 0.975404 |
Target: 5'- gGCcCGUGaaggugaugaacaGCGCCAcGGUCAUCACGUa -3' miRNA: 3'- gUGcGCGC-------------CGUGGUaCUAGUAGUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 20645 | 0.66 | 0.974138 |
Target: 5'- cCGCGCGCuggugGGCGCCuacGUGAugaccguggcgcuguUCAUCACc- -3' miRNA: 3'- -GUGCGCG-----CCGUGG---UACU---------------AGUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 91028 | 0.66 | 0.973091 |
Target: 5'- gCGCGUGCGccGCACCGUG-UCG--GCGUg -3' miRNA: 3'- -GUGCGCGC--CGUGGUACuAGUagUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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