miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 3' -56.8 NC_003521.1 + 100442 0.66 0.945276
Target:  5'- cGGCgCUCGGGA--GCAgGGCCGC-CGa -3'
miRNA:   3'- -UCG-GAGUCCUagUGUgCCGGUGaGUc -5'
14536 3' -56.8 NC_003521.1 + 155920 0.66 0.945276
Target:  5'- uGCUggacCGGGcgCugACGGCCuACUCGc -3'
miRNA:   3'- uCGGa---GUCCuaGugUGCCGG-UGAGUc -5'
14536 3' -56.8 NC_003521.1 + 127052 0.66 0.940865
Target:  5'- uGGCCgUCGccGUCgucgACGCGGCCugUCGGu -3'
miRNA:   3'- -UCGG-AGUccUAG----UGUGCCGGugAGUC- -5'
14536 3' -56.8 NC_003521.1 + 195996 0.66 0.940865
Target:  5'- cAGCCcCAGGAgcuguggcgugUCGCccucCGGCCauccGCUCAGc -3'
miRNA:   3'- -UCGGaGUCCU-----------AGUGu---GCCGG----UGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 141883 0.66 0.940865
Target:  5'- aGGcCCUCAGuguGAUgCGCACGGCCgugcGCgagCAGa -3'
miRNA:   3'- -UC-GGAGUC---CUA-GUGUGCCGG----UGa--GUC- -5'
14536 3' -56.8 NC_003521.1 + 165475 0.66 0.940865
Target:  5'- gAGCgUCAGGugguagucGUCGCG-GGCCGCcgUCAGc -3'
miRNA:   3'- -UCGgAGUCC--------UAGUGUgCCGGUG--AGUC- -5'
14536 3' -56.8 NC_003521.1 + 164309 0.66 0.93623
Target:  5'- aGGCC-CuGGuGUCGCGCGGucCCGCUCuGg -3'
miRNA:   3'- -UCGGaGuCC-UAGUGUGCC--GGUGAGuC- -5'
14536 3' -56.8 NC_003521.1 + 54505 0.66 0.93623
Target:  5'- cGGCCcggcguggacCAGGAUCuGCACGgcGCCGCUgGGg -3'
miRNA:   3'- -UCGGa---------GUCCUAG-UGUGC--CGGUGAgUC- -5'
14536 3' -56.8 NC_003521.1 + 72014 0.66 0.93623
Target:  5'- cAGCUUCAGGAUgcgcCGCGUGGCCugcAC-CAGg -3'
miRNA:   3'- -UCGGAGUCCUA----GUGUGCCGG---UGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 29922 0.66 0.93137
Target:  5'- uGGCCgUCaAGGGccUgGCACGGCCAC-CGa -3'
miRNA:   3'- -UCGG-AG-UCCU--AgUGUGCCGGUGaGUc -5'
14536 3' -56.8 NC_003521.1 + 123290 0.66 0.93137
Target:  5'- cAGCgUCAGG-UC-CGCGGgCgACUCGGc -3'
miRNA:   3'- -UCGgAGUCCuAGuGUGCC-GgUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 62867 0.66 0.930871
Target:  5'- cGCCUCAGcAUCccucccgguaccgAC-CGGCCACUCc- -3'
miRNA:   3'- uCGGAGUCcUAG-------------UGuGCCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 205098 0.66 0.926284
Target:  5'- uGGCUgaucugCAGGAcuUCAgcgccuuuuauCGCGGCCuCUCAGa -3'
miRNA:   3'- -UCGGa-----GUCCU--AGU-----------GUGCCGGuGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 113590 0.66 0.926284
Target:  5'- gGGCCUCGGGggCAacggggGCGGCgCucuGCUCAu -3'
miRNA:   3'- -UCGGAGUCCuaGUg-----UGCCG-G---UGAGUc -5'
14536 3' -56.8 NC_003521.1 + 31764 0.66 0.926284
Target:  5'- cGGCacaUCGGGGUCGCGCcagucGCCGCacucgCAGa -3'
miRNA:   3'- -UCGg--AGUCCUAGUGUGc----CGGUGa----GUC- -5'
14536 3' -56.8 NC_003521.1 + 68411 0.66 0.920972
Target:  5'- cGCCUCGGG-UCcCGCGGCgACg--- -3'
miRNA:   3'- uCGGAGUCCuAGuGUGCCGgUGaguc -5'
14536 3' -56.8 NC_003521.1 + 133189 0.66 0.920429
Target:  5'- cGGCCUCGGcGAUCGggacgacCGCGGUCGgggcgcgggUUCAGg -3'
miRNA:   3'- -UCGGAGUC-CUAGU-------GUGCCGGU---------GAGUC- -5'
14536 3' -56.8 NC_003521.1 + 166238 0.67 0.915435
Target:  5'- cGGCCgCGGGAcgcCGCGCcGCCGCUCc- -3'
miRNA:   3'- -UCGGaGUCCUa--GUGUGcCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 220937 0.67 0.914869
Target:  5'- cAGCagCAGGAUCagcgccgACGCGGCCG-UCAGc -3'
miRNA:   3'- -UCGgaGUCCUAG-------UGUGCCGGUgAGUC- -5'
14536 3' -56.8 NC_003521.1 + 106694 0.67 0.914869
Target:  5'- cGCCauccacuUCAGGGUCAgCuaggcgcgcaggACGGCCAC-CAGg -3'
miRNA:   3'- uCGG-------AGUCCUAGU-G------------UGCCGGUGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.