miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 5' -55.1 NC_003521.1 + 219277 0.66 0.979668
Target:  5'- -aGGGGcUGGCacauGAGCGGgccCAUGAaggccaGCg -3'
miRNA:   3'- gaCCCCaACCG----CUCGCUa--GUACUg-----CG- -5'
14545 5' -55.1 NC_003521.1 + 215054 0.66 0.979668
Target:  5'- -aGGGccaGGCaGGCGAUUagGACGCu -3'
miRNA:   3'- gaCCCcaaCCGcUCGCUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 180858 0.66 0.979668
Target:  5'- -cGcGGGUcaGGCGGGCG-UUGUGGCGa -3'
miRNA:   3'- gaC-CCCAa-CCGCUCGCuAGUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 232565 0.66 0.979668
Target:  5'- -cGGGGgcugcugugUGGUGAGCGGggggcgaCAUG-CGUa -3'
miRNA:   3'- gaCCCCa--------ACCGCUCGCUa------GUACuGCG- -5'
14545 5' -55.1 NC_003521.1 + 83972 0.66 0.977439
Target:  5'- -cGGGGUcGGUGAcccGCGA-CAUGGC-Ca -3'
miRNA:   3'- gaCCCCAaCCGCU---CGCUaGUACUGcG- -5'
14545 5' -55.1 NC_003521.1 + 204108 0.66 0.977439
Target:  5'- uUGGGGUaGGCGuGCGG-CAcGAaggGCa -3'
miRNA:   3'- gACCCCAaCCGCuCGCUaGUaCUg--CG- -5'
14545 5' -55.1 NC_003521.1 + 133185 0.66 0.975035
Target:  5'- gUGGcGGccucGGCGAucgggacgaccGCGGUCggGGCGCg -3'
miRNA:   3'- gACC-CCaa--CCGCU-----------CGCUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 212855 0.66 0.975035
Target:  5'- cCUGGGG--GGC-AGCGGuauggucgucgUCGUGgACGCg -3'
miRNA:   3'- -GACCCCaaCCGcUCGCU-----------AGUAC-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 113847 0.66 0.975035
Target:  5'- gCUGGGGUUucuuccGaGCGuGGCGGUgGUGuaaGCGCc -3'
miRNA:   3'- -GACCCCAA------C-CGC-UCGCUAgUAC---UGCG- -5'
14545 5' -55.1 NC_003521.1 + 7576 0.66 0.975035
Target:  5'- gUGGGuacggUGaCGAGUGAcguagCAUGACGCa -3'
miRNA:   3'- gACCCca---ACcGCUCGCUa----GUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 105760 0.66 0.974023
Target:  5'- uUGGGGgagaugcagacggUGGUgcccGAGCGuuaaccacCGUGACGCa -3'
miRNA:   3'- gACCCCa------------ACCG----CUCGCua------GUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 150541 0.66 0.972449
Target:  5'- gUGGGGUccGGCGguGGUGGUgCGggugGugGCg -3'
miRNA:   3'- gACCCCAa-CCGC--UCGCUA-GUa---CugCG- -5'
14545 5' -55.1 NC_003521.1 + 236442 0.66 0.972449
Target:  5'- -aGcGGGUgaGUGAGCGAgCggGACGCg -3'
miRNA:   3'- gaC-CCCAacCGCUCGCUaGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 128960 0.66 0.972449
Target:  5'- -aGGGGcUGGCG-GCG----UGGCGCu -3'
miRNA:   3'- gaCCCCaACCGCuCGCuaguACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 31002 0.66 0.972449
Target:  5'- aUGGGGcgacgacGGCGccGGCGAg---GACGCg -3'
miRNA:   3'- gACCCCaa-----CCGC--UCGCUaguaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 59254 0.66 0.972449
Target:  5'- gUGGGGcUGcuGCGGGCGuUCGUaaGCGCg -3'
miRNA:   3'- gACCCCaAC--CGCUCGCuAGUAc-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 66632 0.66 0.969676
Target:  5'- -aGGacUUGGUGAGCac-CAUGACGCg -3'
miRNA:   3'- gaCCccAACCGCUCGcuaGUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 77848 0.66 0.966709
Target:  5'- aUGGGGaucUUGGCcagacGGGCGA---UGGCGCc -3'
miRNA:   3'- gACCCC---AACCG-----CUCGCUaguACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 87381 0.66 0.966709
Target:  5'- gUGGaGGacgaGGCG-GCGGagGUGACGCc -3'
miRNA:   3'- gACC-CCaa--CCGCuCGCUagUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 39523 0.67 0.963543
Target:  5'- -aGGGGUcGcGCG-GCGAgagC-UGGCGCa -3'
miRNA:   3'- gaCCCCAaC-CGCuCGCUa--GuACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.