miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 150549 0.66 0.99426
Target:  5'- cGGCgGUGGUGGuGCGGguGGUGGCggCgGCg -3'
miRNA:   3'- -CCG-CACCACU-UGCCauUUACCG--GgUG- -5'
14547 5' -53 NC_003521.1 + 36725 0.66 0.99426
Target:  5'- aGGCGcaGUGGcgccaccaGGUGcacGUGGCCCACg -3'
miRNA:   3'- -CCGCacCACUug------CCAUu--UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 198831 0.66 0.993396
Target:  5'- gGGUGUGGgacAACGGUuuuGGUGGUCgAa -3'
miRNA:   3'- -CCGCACCac-UUGCCAu--UUACCGGgUg -5'
14547 5' -53 NC_003521.1 + 102017 0.66 0.993396
Target:  5'- gGGCGUGGuUGAGCacc---UGGgCCACg -3'
miRNA:   3'- -CCGCACC-ACUUGccauuuACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 46173 0.66 0.993396
Target:  5'- uGCGUGG-GAGUGGUGAugGGCUgCACg -3'
miRNA:   3'- cCGCACCaCUUGCCAUUuaCCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 123210 0.66 0.993305
Target:  5'- cGGCGccgGGUaGGacgggggcgGCGGUAGGUGGUcguagcgCCGCg -3'
miRNA:   3'- -CCGCa--CCA-CU---------UGCCAUUUACCG-------GGUG- -5'
14547 5' -53 NC_003521.1 + 224822 0.66 0.992432
Target:  5'- gGGCGUcugcGGcuGGCGGUAGAUGGaCUCGg -3'
miRNA:   3'- -CCGCA----CCacUUGCCAUUUACC-GGGUg -5'
14547 5' -53 NC_003521.1 + 162982 0.66 0.992432
Target:  5'- --aGUGGUGGgcACGG---GUGGCCC-Ca -3'
miRNA:   3'- ccgCACCACU--UGCCauuUACCGGGuG- -5'
14547 5' -53 NC_003521.1 + 158884 0.66 0.991358
Target:  5'- uGCaUGGUG-ACGGUGAccaccGCCCGCu -3'
miRNA:   3'- cCGcACCACuUGCCAUUuac--CGGGUG- -5'
14547 5' -53 NC_003521.1 + 36416 0.66 0.991358
Target:  5'- gGGCGUGGauuucGCGGUcgGaGGgCCGCg -3'
miRNA:   3'- -CCGCACCacu--UGCCAuuUaCCgGGUG- -5'
14547 5' -53 NC_003521.1 + 199779 0.66 0.991358
Target:  5'- aGGCuucGGUGGuACGG---AUGGCCUGCa -3'
miRNA:   3'- -CCGca-CCACU-UGCCauuUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 26532 0.66 0.991358
Target:  5'- -cCGUGGUGAugGGcauccUGGCCUc- -3'
miRNA:   3'- ccGCACCACUugCCauuu-ACCGGGug -5'
14547 5' -53 NC_003521.1 + 59718 0.66 0.991358
Target:  5'- cGcCGUGGccGAGCuGGUGGAcaUGGCCUAUc -3'
miRNA:   3'- cC-GCACCa-CUUG-CCAUUU--ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 69245 0.66 0.991358
Target:  5'- uGGUGcUGGUGAugAUGGUGGccgacGUGGCaaGCg -3'
miRNA:   3'- -CCGC-ACCACU--UGCCAUU-----UACCGggUG- -5'
14547 5' -53 NC_003521.1 + 218380 0.66 0.991245
Target:  5'- aGGCGUGccgcGUGAagcgcggGCGGUAcucGGCCaCGCc -3'
miRNA:   3'- -CCGCAC----CACU-------UGCCAUuuaCCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 33640 0.66 0.990778
Target:  5'- aGGcCGUGGagGGGCGGccagcagagcggGAuccagcgaccggccGUGGCCCGCa -3'
miRNA:   3'- -CC-GCACCa-CUUGCCa-----------UU--------------UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 30788 0.66 0.990168
Target:  5'- uGGaUGUGG-GcGCGGUAGcgcaccgagGGCCCGCc -3'
miRNA:   3'- -CC-GCACCaCuUGCCAUUua-------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 50845 0.66 0.989657
Target:  5'- cGGCGgcuuuuugagaaGGUGGACGGgucccUGAGgaacggcucggcGGCCCGCa -3'
miRNA:   3'- -CCGCa-----------CCACUUGCC-----AUUUa-----------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 142941 0.66 0.988714
Target:  5'- cGGCGgucagGGUcAGCGG-GGGccccuggucucccUGGCCCGCa -3'
miRNA:   3'- -CCGCa----CCAcUUGCCaUUU-------------ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 90973 0.66 0.988574
Target:  5'- cGGCGUGGUuuaugggauggcGACGGUuaccUGGCaaCCACg -3'
miRNA:   3'- -CCGCACCAc-----------UUGCCAuuu-ACCG--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.