miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 89849 0.66 0.981254
Target:  5'- -gCCGAUGUCGgccgccAGCGCC-GCGUCGc- -3'
miRNA:   3'- aaGGUUGCAGU------UCGCGGgUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 109373 0.66 0.981254
Target:  5'- gUCCAGCGgCAGGCaGgCCAgGUCGc- -3'
miRNA:   3'- aAGGUUGCaGUUCG-CgGGUgCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 166595 0.66 0.981254
Target:  5'- gUCCAcCGUCAcGGCGCCgACGg---- -3'
miRNA:   3'- aAGGUuGCAGU-UCGCGGgUGCaguaa -5'
14560 5' -53.8 NC_003521.1 + 73773 0.66 0.97908
Target:  5'- -aCCGGCGUCAugAGCGC-CACGcCGc- -3'
miRNA:   3'- aaGGUUGCAGU--UCGCGgGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 149275 0.66 0.97908
Target:  5'- gUUCC-GCGUC-GGCGCCCACa----- -3'
miRNA:   3'- -AAGGuUGCAGuUCGCGGGUGcaguaa -5'
14560 5' -53.8 NC_003521.1 + 191999 0.66 0.97908
Target:  5'- -gUCAGCGUCGAGCaGCCguuCAuCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGUUCG-CGG---GU-GCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 171632 0.66 0.97908
Target:  5'- -gCCGACGUCGgguaugucuAGCGCgCCGCGgcgggCGUc -3'
miRNA:   3'- aaGGUUGCAGU---------UCGCG-GGUGCa----GUAa -5'
14560 5' -53.8 NC_003521.1 + 135491 0.66 0.976724
Target:  5'- cUCUAACGUCAcGuCGCCCACa----- -3'
miRNA:   3'- aAGGUUGCAGUuC-GCGGGUGcaguaa -5'
14560 5' -53.8 NC_003521.1 + 128544 0.66 0.976724
Target:  5'- -cCCGACGUCAGGUgGCCCuuGUa--- -3'
miRNA:   3'- aaGGUUGCAGUUCG-CGGGugCAguaa -5'
14560 5' -53.8 NC_003521.1 + 186845 0.66 0.976724
Target:  5'- --gCAACGUCGAGCGCgaucacgaCCACGgCAa- -3'
miRNA:   3'- aagGUUGCAGUUCGCG--------GGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 149916 0.66 0.976478
Target:  5'- cUCCGACGagGAcgauaacGCGCCCuccuCGUCGUc -3'
miRNA:   3'- aAGGUUGCagUU-------CGCGGGu---GCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 135946 0.66 0.974179
Target:  5'- gUgCGACGccUCGGGCGCCUGCGaCAUg -3'
miRNA:   3'- aAgGUUGC--AGUUCGCGGGUGCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 224738 0.66 0.974179
Target:  5'- -gCCGACG-CAGGCGgCCagcGCGUCGg- -3'
miRNA:   3'- aaGGUUGCaGUUCGCgGG---UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 85827 0.66 0.974179
Target:  5'- cUUCCAgggcuucggucuGCGUCGGGgaGCCCACG-CAg- -3'
miRNA:   3'- -AAGGU------------UGCAGUUCg-CGGGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 147647 0.66 0.974179
Target:  5'- cUCCGAcCGUCGAGC-CCCgguagagggACGUCGa- -3'
miRNA:   3'- aAGGUU-GCAGUUCGcGGG---------UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 54872 0.66 0.971438
Target:  5'- gUCCAaucuGCGUCAAGaacaCCaCACGUCAUc -3'
miRNA:   3'- aAGGU----UGCAGUUCgc--GG-GUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 184113 0.66 0.971438
Target:  5'- -cUCGACGUCGAcGCGaCCaGCGUCAUc -3'
miRNA:   3'- aaGGUUGCAGUU-CGC-GGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 142768 0.67 0.968494
Target:  5'- -aCCAGCGUCc-GCGgCgGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGuuCGCgGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 156191 0.67 0.968494
Target:  5'- -gCCGguggcGCGUCAGGaaGCCUACGUCGa- -3'
miRNA:   3'- aaGGU-----UGCAGUUCg-CGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 125271 0.67 0.965665
Target:  5'- gUCCGcgcagcacggcgcucCGUCAGGCGagCCGCGUCGUUc -3'
miRNA:   3'- aAGGUu--------------GCAGUUCGCg-GGUGCAGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.