miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 122746 0.85 0.289831
Target:  5'- cGCCGCCGAUGGcugacaccgggcACGGGGAUGGCGGc -3'
miRNA:   3'- -CGGCGGCUACUu-----------UGUCCCUAUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 98211 0.72 0.893044
Target:  5'- uGCUGUCGGcgggcagcggcguggGAGGCGGGGA-GGCGGGg -3'
miRNA:   3'- -CGGCGGCUa--------------CUUUGUCCCUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 177481 0.72 0.898866
Target:  5'- cGCgGCCG-UGGAGguGGGAUcGCAGu -3'
miRNA:   3'- -CGgCGGCuACUUUguCCCUAuCGUCc -5'
14585 5' -52.6 NC_003521.1 + 155383 0.66 0.995993
Target:  5'- cGCCGgCGcgGAcgacgaggccGGCGGGGGgcugGGCAccGGa -3'
miRNA:   3'- -CGGCgGCuaCU----------UUGUCCCUa---UCGU--CC- -5'
14585 5' -52.6 NC_003521.1 + 97840 0.76 0.733561
Target:  5'- aCCGCCGGUGcGACagagAGGGGU-GCGGGc -3'
miRNA:   3'- cGGCGGCUACuUUG----UCCCUAuCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 97573 0.75 0.740317
Target:  5'- gGCCGCgGAUGGAGguGGuGAUgacgugcucguuggAGCAGGu -3'
miRNA:   3'- -CGGCGgCUACUUUguCC-CUA--------------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 18733 0.74 0.798728
Target:  5'- cGCUGCCGgcGcuGCAGGGcgGGCuguGGg -3'
miRNA:   3'- -CGGCGGCuaCuuUGUCCCuaUCGu--CC- -5'
14585 5' -52.6 NC_003521.1 + 1682 0.74 0.807518
Target:  5'- uGCCGCCacGAcacaGAGGCGGGGAcgccGCAGGa -3'
miRNA:   3'- -CGGCGG--CUa---CUUUGUCCCUau--CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 149045 0.73 0.864284
Target:  5'- cGCCGCCcgGGUGu-GgGGGGAU-GCGGGa -3'
miRNA:   3'- -CGGCGG--CUACuuUgUCCCUAuCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 188506 0.72 0.878764
Target:  5'- cGCCGCCGA-GAuACGaGGAggccGGCGGGc -3'
miRNA:   3'- -CGGCGGCUaCUuUGUcCCUa---UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 102374 0.73 0.871629
Target:  5'- cGCCGCCGgcGAugcacgcGCGGGGAcgAGUAGu -3'
miRNA:   3'- -CGGCGGCuaCUu------UGUCCCUa-UCGUCc -5'
14585 5' -52.6 NC_003521.1 + 148979 0.73 0.841051
Target:  5'- cGCCGCCc-UGGAGgGGGGAUGGgAGa -3'
miRNA:   3'- -CGGCGGcuACUUUgUCCCUAUCgUCc -5'
14585 5' -52.6 NC_003521.1 + 162280 0.77 0.675244
Target:  5'- cGgCGCCGAcacagucucaucacgGGAACGGGGAgAGCGGGg -3'
miRNA:   3'- -CgGCGGCUa--------------CUUUGUCCCUaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 53191 0.73 0.874508
Target:  5'- cGCCGUCGGUGAAcccuccggugagcucGcCGGGGAguccGCGGGc -3'
miRNA:   3'- -CGGCGGCUACUU---------------U-GUCCCUau--CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 156891 0.76 0.692247
Target:  5'- cGCUGcCCGAUGgcACGGGGGgcgacgggccggAGCGGGg -3'
miRNA:   3'- -CGGC-GGCUACuuUGUCCCUa-----------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 109470 0.73 0.841051
Target:  5'- uGCCGCCGAUGAGcuugcgacggcACGGGGcgaAGCGc- -3'
miRNA:   3'- -CGGCGGCUACUU-----------UGUCCCua-UCGUcc -5'
14585 5' -52.6 NC_003521.1 + 110603 0.72 0.878764
Target:  5'- cGCgGCCGAucuccaccaUGAggUAGGGGUAgucguccauguGCAGGc -3'
miRNA:   3'- -CGgCGGCU---------ACUuuGUCCCUAU-----------CGUCC- -5'
14585 5' -52.6 NC_003521.1 + 155447 0.72 0.898866
Target:  5'- aGCCGCUuGUGAGGCGGaGGAgaaggAGgGGGu -3'
miRNA:   3'- -CGGCGGcUACUUUGUC-CCUa----UCgUCC- -5'
14585 5' -52.6 NC_003521.1 + 236160 0.76 0.720904
Target:  5'- cGUCGCCGGcgGGAccuagcggacgaugGguGGGGUGGCAGGa -3'
miRNA:   3'- -CGGCGGCUa-CUU--------------UguCCCUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 110705 0.75 0.771508
Target:  5'- cGCCGCCGAcGAcGCAGGG---GCAGa -3'
miRNA:   3'- -CGGCGGCUaCUuUGUCCCuauCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.