miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 78656 0.66 0.990822
Target:  5'- cGAUGUCgucgggcuucucggCGCagggGAaGCCGCCGUCu -3'
miRNA:   3'- cCUACAGaa------------GCGa---CUgUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 77444 0.66 0.990705
Target:  5'- aGGAUGcCgcCGUuggugcccgUGACACUGCCGcCGc -3'
miRNA:   3'- -CCUACaGaaGCG---------ACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 46501 0.66 0.990588
Target:  5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3'
miRNA:   3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5'
14589 5' -54.2 NC_003521.1 + 193331 0.66 0.989473
Target:  5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3'
miRNA:   3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5'
14589 5' -54.2 NC_003521.1 + 165176 0.66 0.989473
Target:  5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3'
miRNA:   3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 140853 0.66 0.989212
Target:  5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3'
miRNA:   3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 184915 0.66 0.988117
Target:  5'- --------cCGUUGcCGCCGCCGUCGg -3'
miRNA:   3'- ccuacagaaGCGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 164469 0.66 0.988117
Target:  5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3'
miRNA:   3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 114497 0.66 0.988117
Target:  5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3'
miRNA:   3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5'
14589 5' -54.2 NC_003521.1 + 166000 0.66 0.988117
Target:  5'- gGGAcgccGUCg-CGCUcGGCGCCGuCCGUCc -3'
miRNA:   3'- -CCUa---CAGaaGCGA-CUGUGGC-GGCAGc -5'
14589 5' -54.2 NC_003521.1 + 13861 0.66 0.988117
Target:  5'- cGGggGUCUcUGCgggcGGCGCCGCCa--- -3'
miRNA:   3'- -CCuaCAGAaGCGa---CUGUGGCGGcagc -5'
14589 5' -54.2 NC_003521.1 + 195913 0.66 0.988117
Target:  5'- ---cGUCUUCGUccuCGCCGCCG-CGc -3'
miRNA:   3'- ccuaCAGAAGCGacuGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 46071 0.66 0.988117
Target:  5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3'
miRNA:   3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 123501 0.66 0.988117
Target:  5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3'
miRNA:   3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 203806 0.66 0.988117
Target:  5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3'
miRNA:   3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 26883 0.66 0.988117
Target:  5'- uGAUGg---CGCggagcagGugACCGCCGUCc -3'
miRNA:   3'- cCUACagaaGCGa------CugUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 187992 0.66 0.988117
Target:  5'- ---cGUCgaUGCUGucgaucucCACCGCCGUCu -3'
miRNA:   3'- ccuaCAGaaGCGACu-------GUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 113811 0.66 0.98663
Target:  5'- cGGcgG-CgUCGUcgGGCACCGCCacGUCGg -3'
miRNA:   3'- -CCuaCaGaAGCGa-CUGUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 82853 0.66 0.98663
Target:  5'- cGGcgG-CgUCGCUaccaGCGCCGUCGUCGc -3'
miRNA:   3'- -CCuaCaGaAGCGAc---UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 44494 0.66 0.98663
Target:  5'- uGGAaaUCga-GCUGcaGCCGCCGUCGu -3'
miRNA:   3'- -CCUacAGaagCGACugUGGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.