Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14589 | 5' | -54.2 | NC_003521.1 | + | 78656 | 0.66 | 0.990822 |
Target: 5'- cGAUGUCgucgggcuucucggCGCagggGAaGCCGCCGUCu -3' miRNA: 3'- cCUACAGaa------------GCGa---CUgUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 77444 | 0.66 | 0.990705 |
Target: 5'- aGGAUGcCgcCGUuggugcccgUGACACUGCCGcCGc -3' miRNA: 3'- -CCUACaGaaGCG---------ACUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46501 | 0.66 | 0.990588 |
Target: 5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3' miRNA: 3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 193331 | 0.66 | 0.989473 |
Target: 5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3' miRNA: 3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 165176 | 0.66 | 0.989473 |
Target: 5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3' miRNA: 3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 140853 | 0.66 | 0.989212 |
Target: 5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3' miRNA: 3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 13861 | 0.66 | 0.988117 |
Target: 5'- cGGggGUCUcUGCgggcGGCGCCGCCa--- -3' miRNA: 3'- -CCuaCAGAaGCGa---CUGUGGCGGcagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 195913 | 0.66 | 0.988117 |
Target: 5'- ---cGUCUUCGUccuCGCCGCCG-CGc -3' miRNA: 3'- ccuaCAGAAGCGacuGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 166000 | 0.66 | 0.988117 |
Target: 5'- gGGAcgccGUCg-CGCUcGGCGCCGuCCGUCc -3' miRNA: 3'- -CCUa---CAGaaGCGA-CUGUGGC-GGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 114497 | 0.66 | 0.988117 |
Target: 5'- uGGGUG-CUgucCGUcGugGCCGCCGUg- -3' miRNA: 3'- -CCUACaGAa--GCGaCugUGGCGGCAgc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 164469 | 0.66 | 0.988117 |
Target: 5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3' miRNA: 3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 46071 | 0.66 | 0.988117 |
Target: 5'- gGGAUGaggUCGC-GACGcCCGgCGUCGc -3' miRNA: 3'- -CCUACagaAGCGaCUGU-GGCgGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 187992 | 0.66 | 0.988117 |
Target: 5'- ---cGUCgaUGCUGucgaucucCACCGCCGUCu -3' miRNA: 3'- ccuaCAGaaGCGACu-------GUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 26883 | 0.66 | 0.988117 |
Target: 5'- uGAUGg---CGCggagcagGugACCGCCGUCc -3' miRNA: 3'- cCUACagaaGCGa------CugUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 203806 | 0.66 | 0.988117 |
Target: 5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3' miRNA: 3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 123501 | 0.66 | 0.988117 |
Target: 5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3' miRNA: 3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 184915 | 0.66 | 0.988117 |
Target: 5'- --------cCGUUGcCGCCGCCGUCGg -3' miRNA: 3'- ccuacagaaGCGACuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44494 | 0.66 | 0.98663 |
Target: 5'- uGGAaaUCga-GCUGcaGCCGCCGUCGu -3' miRNA: 3'- -CCUacAGaagCGACugUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 82853 | 0.66 | 0.98663 |
Target: 5'- cGGcgG-CgUCGCUaccaGCGCCGUCGUCGc -3' miRNA: 3'- -CCuaCaGaAGCGAc---UGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 113811 | 0.66 | 0.98663 |
Target: 5'- cGGcgG-CgUCGUcgGGCACCGCCacGUCGg -3' miRNA: 3'- -CCuaCaGaAGCGa-CUGUGGCGG--CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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